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    MYBPA1 MYBPA1 protein [ Vitis vinifera (wine grape) ]

    Gene ID: 100232899, updated on 29-Sep-2023

    Summary

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    Gene symbol
    MYBPA1
    Gene description
    MYBPA1 protein
    Locus tag
    VIT_00027182001
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    Location:
    chromosome: 15
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 15 NC_081819.1 (20470387..20471334)
    102 previous assembly 12X (GCF_000003745.3) 15 NC_012021.3 (17211667..17213117)

    Chromosome 15 - NC_081819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132255204 Neighboring gene dof zinc finger protein DOF2.5-like Neighboring gene WD repeat-containing protein YMR102C Neighboring gene pyridoxine/pyridoxamine 5'-phosphate oxidase 2 Neighboring gene laccase-6 Neighboring gene probable alkaline/neutral invertase F

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The R2R3MYB VvMYBPA1 from grape reprograms the phenylpropanoid pathway in tobacco flowers. Passeri V, et al. Planta, 2017 Aug. PMID 28299441
    2. The grapevine transcription factor VvMYBPA1 regulates proanthocyanidin synthesis during fruit development. Bogs J, et al. Plant Physiol, 2007 Mar. PMID 17208963, Free PMC Article
    3. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. VvMYBPA1 alters the phenylpropanoid pathway in tobacco floral organs, in a structure-specific fashion.
      Title: The R2R3MYB VvMYBPA1 from grape reprograms the phenylpropanoid pathway in tobacco flowers.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    MYBPA1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281231.1 → NP_001268160.1  MYBPA1 protein

      See identical proteins and their annotated locations for NP_001268160.1

      Status: PROVISIONAL

      Source sequence(s)
      AM259485
      UniProtKB/TrEMBL
      A0A438IF74, A4F4L3, F6I6F8
      Conserved Domains (2) summary
      smart00717
      Location:67 → 114
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:67 → 112
      Myb_DNA-binding; Myb-like DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081819.1 Reference ASM3070453v1 Primary Assembly

      Range
      20470387..20471334
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials