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Sample GSM71350 Query DataSets for GSM71350
Status Public on Jan 15, 2006
Title GM03332 5G Irr (5/4) vs. GM03332 mock for 5G (5/4) (ExpID 541) Rep 4
Sample type RNA
 
Channel 1
Source name GM03332 5G Irr (5/4) (Cy5)
Organism Homo sapiens
Characteristics GM03332 5G Irr (5/4)
Biomaterial provider http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03332
Coriell
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name GM03332 mock for 5G (5/4) (Cy3)
Organism Homo sapiens
Characteristics GM03332 mock for 5G (5/4)
Biomaterial provider http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03332
Coriell
Extracted molecule total RNA
Label Cy3
 
 
Description Human Ataxia telangiectasia non-fetal B-lymphocytes, EBV-immortalized, from Coriell Institute for Medical Research, 13 yr old, Black male
Data processing See Heinloth et al, 2003, Molecular Carcinogenesis 37:65-82
 
Submission date Aug 22, 2005
Last update date Aug 22, 2005
Contact name Cynthia Innes
E-mail(s) innes@niehs.nih.gov
Phone 919-541-4721
Fax 919-541-1506
Organization name NIEHS
Department NCT
Lab GCCG
Street address 111 ALEXANDER DR
City DURHAM
State/province NC
ZIP/Postal code 27511
Country USA
 
Platform ID GPL2710
Series (1)
GSE3174 ATM Requirement in Gene Expression Responses to Ionizing Radiation in Human Lymphoblasts and Fibroblasts

Data table header descriptions
ID_REF
PenAt
RowAt
ColumnAt
SR_top
SR_left
SR_bottom
SR_right
SR_T. Int.
SR_Mean Treated
SR_S.Dev
SR_SNR
SR_iQuality
SR_bkMean
SR_bkDev
SG_top
SG_left
SG_bottom
SG_right
SG_T. Int.
SG_Mean Control
SG_S.Dev
SG_SNR
SG_iQuality
SG_bkMean
SG_bkDev
unionArea
propArea
VALUE log2 of PRE_VALUE
rQuality
confLevel
lowerLimit
upperLimit
M Calibration Parameter
CV
Flag
PRE_VALUE Treated:Control divided by the calibration parameter

Data table
ID_REF PenAt RowAt ColumnAt SR_top SR_left SR_bottom SR_right SR_T. Int. SR_Mean SR_S.Dev SR_SNR SR_iQuality SR_bkMean SR_bkDev SG_top SG_left SG_bottom SG_right SG_T. Int. SG_Mean SG_S.Dev SG_SNR SG_iQuality SG_bkMean SG_bkDev unionArea propArea VALUE rQuality confLevel lowerLimit upperLimit M CV Flag PRE_VALUE
1 1 1 1 25 44 62 81 274618 1228 494.3 7.4 1 464.2 116.4 25 44 62 81 317750 1497.7 595.6 15.8 1 446.8 66.2 162 0.733 -0.1047 1 99 0.803 1.2453 0.8817 0.0596 1 0.93
25 1 1 2 25 82 62 119 146688 523.5 239 3.2 1 457.4 113.2 25 82 62 119 177372 740 250.9 7.9 1 448.2 64.6 146 0.6606 -0.3178 0.9 99 0.803 1.2453 0.8817 0.0596 1 0.8023
49 1 1 3 25 119 62 156 449938 2371.6 909.4 14.5 1 461.6 112.3 25 119 62 156 513206 2807.9 1033.2 31.2 1 431.6 59.2 159 0.7195 -0.0621 1 99 0.803 1.2453 0.8817 0.0596 1 0.9579
73 1 1 4 25 156 62 193 194942 801.4 315.2 4.5 1 472.7 133.4 25 156 62 193 209911 959.9 329.6 10.5 1 431 61.7 150 0.6787 -0.0787 1 99 0.803 1.2453 0.8817 0.0596 1 0.9469
3 1 1 5 25 194 62 231 252051 888.4 544.6 4.9 1 486.8 137.1 25 194 62 231 282630 1080.3 708.8 11 1 453.2 71.6 176 0.7964 -0.1005 1 99 0.803 1.2453 0.8817 0.0596 1 0.9327
27 1 1 6 25 231 62 268 246656 1075.5 431.1 6.1 1 482.5 128.9 25 231 62 268 260354 1240.8 483.3 13.6 1 429.2 61.5 156 0.7059 -0.0247 1 99 0.803 1.2453 0.8817 0.0596 1 0.983
51 1 1 7 25 268 62 305 483781 2240.2 970.3 13.1 1 473.9 122.6 25 268 62 305 538234 2618.8 1174.1 28.5 1 427 62.3 179 0.81 -0.0436 1 99 0.803 1.2453 0.8817 0.0596 1 0.9702
75 1 1 8 25 305 62 342 212099 869.9 340.8 5.1 1 472.2 122.8 25 305 62 342 221965 946.3 330.9 10.1 1 446.2 64.5 156 0.7059 0.0602 1 99 0.803 1.2453 0.8817 0.0596 1 1.0426
5 1 1 9 25 343 62 380 355708 1760.1 741.7 10.4 1 459.4 120.2 25 343 62 380 367965 1878.5 678.6 21.3 1 422.4 56.7 160 0.724 0.0877 1 99 0.803 1.2453 0.8817 0.0596 1 1.0627
29 1 1 10 25 380 62 417 318978 1520.2 484.9 9 1 460.5 120.1 25 380 62 417 344215 1710.3 501.5 19.7 1 422.8 54.4 163 0.7376 0.0116 1 99 0.803 1.2453 0.8817 0.0596 1 1.0081
53 1 1 11 25 417 62 454 667193 3430.7 1596.4 21.8 1 429.9 102.9 25 417 62 454 724006 3743.2 1826.6 38.9 1 475.1 68.4 172 0.7783 0.0559 1 99 0.803 1.2453 0.8817 0.0596 1 1.0395
77 1 1 12 25 455 62 492 244244 886.7 375.3 5.3 1 499.1 119.4 25 455 62 492 262779 1054 392.7 11.6 1 446.5 60.5 175 0.7919 -0.0676 1 99 0.803 1.2453 0.8817 0.0596 1 0.9542
7 1 1 13 25 492 62 529 195416 668 312.4 4.1 1 478 113.3 25 492 62 529 208089 767.7 308 8.3 1 458.2 63.7 169 0.7647 -0.0190 1 99 0.803 1.2453 0.8817 0.0596 1 0.9869
31 1 1 14 25 529 62 566 1084091 5673.1 2536.3 37 1 432 97.3 25 529 62 566 1103479 5746.3 2577.7 62.2 1 459.1 62.9 182 0.8235 0.1631 1 99 0.803 1.2453 0.8817 0.0596 1 1.1197
55 1 1 15 25 566 62 603 190796 747.3 297.9 4.9 1 429.9 97.5 25 566 62 603 193426 746.8 306.3 7.9 1 464.4 66.8 158 0.7149 0.1827 1 99 0.803 1.2453 0.8817 0.0596 1 1.135
79 1 1 16 25 604 62 641 237559 885 394.2 5.2 1 501.1 121.4 25 604 62 641 254104 983.6 347.8 10 1 487.6 71.3 161 0.7285 0.0291 1 99 0.803 1.2453 0.8817 0.0596 1 1.0204
9 1 1 17 25 641 62 678 268478 1176 435.7 7 1 499.9 118.9 25 641 62 678 282664 1305.1 488.3 13.5 1 491.2 69.5 158 0.7149 0.0314 1 99 0.803 1.2453 0.8817 0.0596 1 1.022
33 1 1 18 25 678 62 715 510904 2832.1 1121.5 15.8 1 532.1 133.7 25 678 62 715 488520 2706.6 1020.8 28.1 1 496 68.6 152 0.6878 0.2471 1 99 0.803 1.2453 0.8817 0.0596 1 1.1868
57 1 1 19 25 716 62 753 670535 3460.5 1397.5 20.1 1 543.1 125 25 716 62 753 740879 3951.2 1650.5 41.3 1 486.4 67.5 171 0.7738 -0.0097 1 99 0.803 1.2453 0.8817 0.0596 1 0.9933
81 1 1 20 25 753 62 790 237927 923.8 444.3 5.2 1 551.7 133.1 25 753 62 790 240377 999.7 496.4 10.6 1 488.4 65.8 156 0.7059 0.0676 1 99 0.803 1.2453 0.8817 0.0596 1 1.048

Total number of rows: 1936

Table truncated, full table size 338 Kbytes.




Supplementary data files not provided
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