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Sample GSM488897 Query DataSets for GSM488897
Status Public on Sep 15, 2011
Title CHOP0811
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 478
shimada: 2
sex: 2
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 22, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) jagannathan@email.chop.edu
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6982
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-126_B_F_IFB1157714387:0 0.183717
rs10000010-126_B_F_IFB1153208421:0 0.1938934
rs10000023-126_B_F_IFB1153358872:0 -0.5622304
rs10000030-120_B_R_IFB1137703207:0 0.1760318
rs10000041-126_T_R_IFB1138580443:0 0.2006129
rs1000007-123_T_F_IFB1152225452:0 0.2990103
rs10000081-126_B_F_IFB1142608068:0 -0.070099
rs10000092-123_T_R_IFB1153358875:0 0.3200192
rs10000121-126_B_R_IFB1136471760:0 0.2932712
rs10000134-119_T_R_IFB1140474257:0 0.4206659
rs1000014-126_B_R_IFB1136184019:0 -0.2538772
rs10000141-126_T_F_IFB1137734411:0 0.2300911
rs10000143-119_T_R_IFB1141671490:0 0.3383485
rs1000016-126_B_R_IFB1156563530:0 -0.0982691
rs10000160-119_T_F_IFB1139532456:0 0.7260694
rs10000169-119_T_R_IFB1135612081:0 0.2786053
rs10000185-123_B_F_IFB1138742483:0 -0.2310924
rs10000201-126_T_F_IFB1139525076:0 0.6361486
rs1000022-126_B_F_IFB1135126284:0 0.0081751
rs10000226-126_B_F_IFB1141217968:0 -0.1345362

Total number of rows: 561303

Table truncated, full table size 24373 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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