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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 14, 2004 |
| Title |
TXPBL2 |
| Sample type |
RNA |
| |
|
| Source name |
PBL
|
| Organism |
Homo sapiens |
| Extracted molecule |
total RNA |
| |
|
| Description |
Clinical status: PBL sample from patient with well-functioning transplant with no clinical evidence of rejection
Age: 57
Sex: Female
Immunosupression: FK/MMF/P
Histopathology: none
Donor type: LD
Scr (mg/dL): 1.3
Days post transplant: 42
Abbreviations used in sample description: Abreviations used to describe patient samples include the following: BX - Biopsy; PBL- Peripheral Blood Lymphocytes; CsA -Cyclosporine; MMF - Mycophenolate Mofetil; P - Prednisone; FK - Tacrolimus; SRL - Sirolimus; CAD -Cadaveric; LD - Live Donor; Scr - Serum Creatinine; ATN - Acute Tubular Necrosis CNI - Calcineurin Inhibitor; FSGS - Focal Segmental Glomerulosclerosis
Keywords = DNA microarrays, gene expression, kidney, rejection, transplant
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| |
|
| Submission date |
Jul 14, 2004 |
| Last update date |
Mar 16, 2009 |
| Contact name |
Steven Head |
| E-mail(s) |
shead@scripps.edu
|
| Phone |
858 784-2263
|
| Organization name |
The Scripps Research Institute
|
| Street address |
10550 N Torrey Pines Rd
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL8300 |
| Series (1) |
| GSE1563 |
Kidney Transplant Rejection and Tissue Injury by Gene Profiling of Biopsies and Peripheral Blood Lymphocytes |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
estimate of relative transcript abundance using dChip PM only model. |
| ABS_CALL |
the call in an MAS 5.0 absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M) |
| DETECTION P-VALUE |
'detection p-value', MAS 5.0 p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-MurIL2_at |
223.876 |
A |
0.88389 |
| AFFX-MurIL10_at |
195.243 |
A |
0.48511 |
| AFFX-MurIL4_at |
95.3216 |
A |
0.80473 |
| AFFX-MurFAS_at |
90.874 |
A |
0.44065 |
| AFFX-BioB-5_at |
830.161 |
P |
0.00075 |
| AFFX-BioB-M_at |
1090.86 |
P |
0.00007 |
| AFFX-BioB-3_at |
1185.78 |
P |
0.00017 |
| AFFX-BioC-5_at |
2048.64 |
P |
0.00015 |
| AFFX-BioC-3_at |
2173.47 |
P |
0.00005 |
| AFFX-BioDn-5_at |
2082.7 |
P |
0.00004 |
| AFFX-BioDn-3_at |
6571.43 |
P |
0.00008 |
| AFFX-CreX-5_at |
9669.24 |
P |
0.00004 |
| AFFX-CreX-3_at |
11667.9 |
P |
0.00004 |
| AFFX-BioB-5_st |
110.3 |
A |
0.32708 |
| AFFX-BioB-M_st |
243.278 |
A |
0.54459 |
| AFFX-BioB-3_st |
315.785 |
A |
0.87643 |
| AFFX-BioC-5_st |
285.543 |
A |
0.95352 |
| AFFX-BioC-3_st |
311.886 |
A |
0.60308 |
| AFFX-BioDn-5_st |
634.763 |
A |
0.13948 |
| AFFX-BioDn-3_st |
579.457 |
P |
0.02002 |
Total number of rows: 12625
Table truncated, full table size 334 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM26820.CEL.gz |
2.9 Mb |
(ftp)(http) |
CEL |
| GSM26820.EXP.gz |
504 b |
(ftp)(http) |
EXP |
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