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|
| Status |
Public on Feb 15, 2008 |
| Title |
O#9 |
| Sample type |
RNA |
| |
|
| Source name |
bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
Female, 19 months of age
|
| Biomaterial provider |
COG cell bank
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen Rneasy
|
| Label |
biotin
|
| Label protocol |
Enzo BioArray HighYield RNA transcript labeling kit
|
| |
|
| Hybridization protocol |
Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450
|
| Scan protocol |
M10 scanner, Pixel size 1.56, Filter 570
|
| Description |
SER: slow early responder = patient with M3 marrow at Day 7
|
| Data processing |
MAS 5.0
|
| |
|
| Submission date |
Apr 03, 2007 |
| Last update date |
Nov 14, 2018 |
| Contact name |
Deepa Bhojwani |
| E-mail(s) |
deepa.bhojwani@med.nyu.edu
|
| Organization name |
New York University School of Medicine
|
| Department |
Pediatric Hematology Oncology
|
| Street address |
Smilow Research Building 1206-B, 522 First Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10016 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE7440 |
Early Response and Outcome in High-Risk Childhood Acute Lymphoblastic Leukemia: A Children’s Oncology Group Study |
|
| Relations |
| Reanalyzed by |
GSE64985 |
| Reanalyzed by |
GSE119087 |
| Reanalyzed by |
GSE122511 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
Signal |
| ABS_CALL |
indicating whether the transcript was present (P), absent (A), or marginal (M) |
| DETECTION P-VALUE |
|
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
288.834 |
P |
6.02111e-05 |
| AFFX-BioB-M_at |
485.085 |
P |
4.42873e-05 |
| AFFX-BioB-3_at |
352.97 |
P |
4.42873e-05 |
| AFFX-BioC-5_at |
1514.43 |
P |
4.42873e-05 |
| AFFX-BioC-3_at |
1089.62 |
P |
4.42873e-05 |
| AFFX-BioDn-5_at |
1178.63 |
P |
4.42873e-05 |
| AFFX-BioDn-3_at |
2897.88 |
P |
4.42873e-05 |
| AFFX-CreX-5_at |
7778.89 |
P |
5.16732e-05 |
| AFFX-CreX-3_at |
8363.38 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
4.12113 |
A |
0.313708 |
| AFFX-DapX-M_at |
0.780148 |
A |
0.953518 |
| AFFX-DapX-3_at |
1.94937 |
A |
0.860518 |
| AFFX-LysX-5_at |
3.91287 |
A |
0.544587 |
| AFFX-LysX-M_at |
1.80317 |
A |
0.794268 |
| AFFX-LysX-3_at |
2.67428 |
A |
0.724854 |
| AFFX-PheX-5_at |
1.39081 |
A |
0.969024 |
| AFFX-PheX-M_at |
2.6976 |
A |
0.824672 |
| AFFX-PheX-3_at |
19.7285 |
A |
0.156732 |
| AFFX-ThrX-5_at |
2.3771 |
A |
0.631562 |
| AFFX-ThrX-M_at |
2.26857 |
A |
0.904333 |
Total number of rows: 54675
Table truncated, full table size 1613 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM180140.CEL.gz |
8.1 Mb |
(ftp)(http) |
CEL |
| GSM180140.CHP.gz |
13.0 Mb |
(ftp)(http) |
CHP |
| GSM180140.EXP.gz |
367 b |
(ftp)(http) |
EXP |
| Processed data provided as supplementary file |
| Processed data included within Sample table |
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