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|
| Status |
Public on Jan 01, 2008 |
| Title |
Prostate tumor patient 61 (HG-U133A 2.0 Array) |
| Sample type |
RNA |
| |
|
| Source name |
Adenocarcinoma (NOS) of the prostate
|
| Organism |
Homo sapiens |
| Characteristics |
race: African American
smoking status: Unknown
gleason sum: 7
pt stage: 3
extraprostatic extension: Focal
perineural invasion: Yes
seminal vesicle invasion: Yes
are surgical margins involved: Tumor focal at margin
angio lymphatic invasion: No
|
| Extracted molecule |
total RNA |
| Extraction protocol |
TRIzol
|
| Label |
biotin
|
| Label protocol |
Standard Affy protocol
|
| |
|
| Hybridization protocol |
Standard Affy protocol
|
| Scan protocol |
Standard Affy protocol
|
| Description |
Race: African American, Smoking Status: Unknown, Gleason Sum: 7, PT Stage: 3, Extraprostatic Extension: Focal, Perineural Invasion: Yes, Seminal vesicle invasion: Yes, Are Surgical margins involved: Tumor focal at margin, Angio lymphatic invasion: No
|
| Data processing |
MAS5
|
| |
|
| Submission date |
Feb 05, 2007 |
| Last update date |
Apr 16, 2015 |
| Contact name |
Robert Scott Hudson |
| Organization name |
NIH
|
| Department |
NCI
|
| Lab |
The Laboratory of Human Carcinogenesis
|
| Street address |
National Cancer Institute Room Blgd.37/3044
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
|
| Platform ID |
GPL571 |
| Series (2) |
| GSE6956 |
Tumor Immunobiological Differences in Prostate Cancer between African-American and European-American Men |
| GSE7055 |
Expression of microRNAs and Protein-coding Genes Associated with Perineural Invasion in Prostate Cancer |
|
| Data table header descriptions |
| ID_REF |
Affy ID |
| VALUE |
MAS5-calculated Signal intensity |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
| 1007_s_at |
2174.933579 |
P |
| 1053_at |
579.0466585 |
P |
| 117_at |
52.7136109 |
P |
| 121_at |
342.7545596 |
P |
| 1255_g_at |
17.30172328 |
A |
| 1294_at |
254.4383178 |
P |
| 1316_at |
48.71315427 |
P |
| 1320_at |
101.8714155 |
A |
| 1405_i_at |
200.6404838 |
P |
| 1431_at |
80.19722242 |
P |
| 1438_at |
256.1744071 |
P |
| 1487_at |
249.6241119 |
P |
| 1494_f_at |
66.42509297 |
P |
| 1598_g_at |
1675.279291 |
P |
| 160020_at |
191.7675988 |
P |
| 1729_at |
587.9823144 |
P |
| 1773_at |
182.091492 |
P |
| 177_at |
24.70485405 |
P |
| 179_at |
199.5603196 |
M |
| 1861_at |
352.7094828 |
P |
Total number of rows: 22277
Table truncated, full table size 540 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM160401.CEL.gz |
2.1 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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