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GEO accession:
Sample GSM117276
Query DataSets for GSM117276
Status
Public on Sep 30, 2006
Title
NA12761_Sty_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 3
Biomaterial provider
Coriell NA12761
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12761
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3720
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1855402
AB
0.007813
11.064
0.566929
0.511265
SNP_A-4249904
AB
0.007813
13.352
0.504791
0.469507
SNP_A-2174835
AB
0.007813
9.505
0.591463
0.513369
SNP_A-1880271
AB
0.007813
18.022
0.487805
0.453957
SNP_A-2313232
AB
0.007813
12.103
0.516451
0.542807
SNP_A-1790918
AB
0.023438
11.463
0.461585
0.441943
SNP_A-1812820
AB
0.023438
17.876
0.486077
0.462994
SNP_A-1825137
AB
0.015625
10.912
0.454823
0.365180
SNP_A-1855057
AB
0.007813
13.442
0.571429
0.479763
SNP_A-1855068
AB
0.007813
11.601
0.667283
0.572929
SNP_A-4249854
AB
0.132813
5.481
0.619149
0.731707
SNP_A-4249855
AB
0.007813
15.437
0.434783
0.348101
SNP_A-1855365
AB
0.015625
8.438
0.425676
0.476744
SNP_A-1856257
AB
0.007813
15.113
0.426052
0.569767
SNP_A-1862900
AB
0.007813
15.350
0.423790
0.427582
SNP_A-1894450
AB
0.007813
8.294
0.492721
0.461538
SNP_A-1900543
AB
0.382813
8.280
0.474886
0.030726
SNP_A-1905760
AB
0.007813
14.723
0.444628
0.402284
SNP_A-1907304
AB
0.007813
15.604
0.450413
0.459097
SNP_A-1941504
AB
0.093750
0.851
0.412962
0.626437
Total number of rows:
238304
Table truncated, full table size
11778 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117276.CEL.gz
41.2 Mb
(ftp)
(http)
CEL
GSM117276.raw.txt.gz
24.1 Mb
(ftp)
(http)
TXT
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