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| Status |
Public on Aug 01, 2011 |
| Title |
Genome-wide nucleosome position data for 3 yeast species |
| Organisms |
Schizosaccharomyces pombe; Saccharomyces cerevisiae; Candida albicans |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Genome-wide nucleosome position data for wildtype and mutant strains in S. cerevisiae, C. albicans, and S. pombe
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| Overall design |
Illumina sequencing of mononucleosomal DNA isolated from mid-log cultures grown in rich medium (abbreviated CM, in house recipe). S. pombe samples were grown in YES medium at permissive temperature (30C) and restrictive temperature (35C)
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| Contributor(s) |
Tsankov A, Rhind N, Rando O, Regev A |
| Citation(s) |
21914852 |
| Submission date |
Apr 25, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Alex M Tsankov |
| E-mail(s) |
atsankov@mit.edu
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| Phone |
6172532442
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| Fax |
6172532442
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| Organization name |
MIT
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| Street address |
155 Bay State
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
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| Platforms (3) |
| GPL9133 |
Illumina Genome Analyzer (Candida albicans) |
| GPL9134 |
Illumina Genome Analyzer (Saccharomyces cerevisiae) |
| GPL9854 |
Illumina Genome Analyzer (Schizosaccharomyces pombe) |
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| Samples (7)
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| GSM713285 |
Spom wildtype genome-wide nucleosome data, cells grown in CM medium, 30C |
| GSM713286 |
Spom wildtype genome-wide nucleosome data, cells grown in YES at 30C |
| GSM713287 |
Spom wildtype genome-wide nucleosome data, cells grown in YES at restrictive temp 35C |
| GSM713288 |
Spom Sap1ts genome-wide nucleosome data, cells grown in YES at restrictive temp 35C |
| GSM713289 |
Spom Sap1ts genome-wide nucleosome data, cells grown in YES at restrictive temp 35C, sample well-digested |
| GSM714187 |
S. cerevisiae delta cbf1 genome-wide nucleosome data, cells grown in CM medium, 30C |
| GSM714188 |
C. albicans delta cbf1 genome-wide nucleosome data, cells grown in CM medium, 30C |
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| Relations |
| SRA |
SRP006459 |
| BioProject |
PRJNA140615 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE28839_Calb.fsa.txt.gz |
4.2 Mb |
(ftp)(http) |
TXT |
| GSE28839_RAW.tar |
360.3 Mb |
(http)(custom) |
TAR (of TXT, WIG) |
| GSE28839_Scer.fsa.txt.gz |
3.6 Mb |
(ftp)(http) |
TXT |
| GSE28839_Spom.fsa.txt.gz |
3.7 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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