|
| Status |
Public on Sep 02, 2011 |
| Title |
Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) and NFP allelic mutants |
| Platform organisms |
Sinorhizobium meliloti; Medicago sativa; Medicago truncatula |
| Sample organism |
Medicago truncatula |
| Experiment type |
Expression profiling by array
|
| Summary |
affy_aphanomyces_medicago - NFP is one of the putative Nod factor receptor and plays therefore a key role in the establishment of symbiosis. nfp allelic mutants are more susceptible to Aphanomyces euteiches (Ae), a root pathogen, than the A17 wild type (WT) line. In this study we want to compare the early plant responses, 1 day post inoculation (dpi) between WT and the nfp2 mutant, in order to identify NFP-dependent gene networks during infection.-Fifteen-day-old A17 or nfp-2 plants were grown in vitro on M medium. The entire roots were then inoculated (or not = controls) with a A. euteiches zoospores (105/ml) and harvested one day after inoculation. Three independent repeats were performed.
Keywords: normal vs ems mutant comparison,near isogenic lines (hif)
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| |
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| Overall design |
12 arrays - Medicago
|
| Web link |
http://urgv.evry.inra.fr/CATdb
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| |
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| Contributor(s) |
Balzergue S, Jacquet C, Martin-Magniette ML |
| Citation(s) |
23432463 |
| Submission date |
Mar 02, 2010 |
| Last update date |
Mar 07, 2013 |
| Contact name |
sandrine balzergue |
| Organization name |
INRA
|
| Lab |
IRHS
|
| Street address |
Rue G. Morel
|
| City |
Beaucouze |
| ZIP/Postal code |
49000 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL4652 |
[Medicago] Affymetrix Medicago Genome Array |
|
| Samples (12)
|
| GSM517091 |
nfpi_11 with array type Medicago from Affymetrix |
| GSM517092 |
nfpi_12 with array type Medicago from Affymetrix |
| GSM517093 |
nfpi_10 with array type Medicago from Affymetrix |
| GSM517094 |
a17i_1 with array type Medicago from Affymetrix |
| GSM517095 |
nfpni_8 with array type Medicago from Affymetrix |
| GSM517096 |
a17i_3 with array type Medicago from Affymetrix |
| GSM517097 |
a17ni_3 with array type Medicago from Affymetrix |
| GSM517098 |
a17ni_1 with array type Medicago from Affymetrix |
| GSM517099 |
nfpni_7 with array type Medicago from Affymetrix |
| GSM517100 |
nfpni_9 with array type Medicago from Affymetrix |
| GSM517101 |
a17ni_2 with array type Medicago from Affymetrix |
| GSM517102 |
a17i_2 with array type Medicago from Affymetrix |
|
| Relations |
| BioProject |
PRJNA125285 |
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