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| Status |
Public on Aug 11, 2009 |
| Title |
Transcription patterns during wheat development |
| Organism |
Triticum aestivum |
| Experiment type |
Expression profiling by array
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| Summary |
The analysis of gene expression during wheat development:
Gene expression measurements were carried out on a developmental tissue
series for wild-type wheat (cv. Chinese Spring) using the Affymetrix
Wheat GeneChip. Thirteen tissues at defined developmental stages were
chosen to match the barley (cv. Morex) tissue series of Druka et al.
2006 that used the Affymetrix Barley1 GeneChip. Three replicates of:
root tissue at two different developmental stages, leaf, crown,
caryopsis, anther, pistil, inflorescence, bracts, mesocotyl, endosperm,
embryo and coleoptiles were hybridised. Comparisons between this wheat
data and the barley dataset were performed and are available at
http://contigcomp.acpfg.com.au
[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Tim Sutton. The equivalent experiment is TA3 at PLEXdb.]
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| Overall design |
tissue type: germinating seed, coleoptile(3-replications); tissue type: germinating seed, root(3-replications); tissue type: germinating seed, embryo(3-replications); tissue type: seedling, root(3-replications); tissue type: seedling, crown(3-replications); tissue type: seedling, leaf(3-replications); tissue type: immature inflorescence(3-replications); tissue type: floral bracts, before anthesis(3-replications); tissue type: pistil, before anthesis(3-replications); tissue type: anthers, before anthesis(3-replications); tissue type: 3-5 DAP caryopsis(3-replications); tissue type: 22 DAP embryo(3-replications); tissue type: 22 DAP endosperm(3-replications)
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| Web link |
http://www.plexdb.org/modules/PD_browse/experiment_browser.php?experiment=TA3
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| Contributor(s) |
Sutton T |
| Citation(s) |
19558723 |
| Submission date |
Aug 20, 2008 |
| Last update date |
Dec 04, 2018 |
| Contact name |
PLEXdb Curator, Sudhansu Dash |
| Organization name |
Iowa State University
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| Department |
Virtual Reality Application Center
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| Lab |
PLEXdb
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| Street address |
1023 Crop Genomes Informatics Lab (Iowa State University)
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| City |
Ames |
| State/province |
IA |
| ZIP/Postal code |
50011 |
| Country |
USA |
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| Platforms (1) |
| GPL3802 |
[wheat] Affymetrix Wheat Genome Array |
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| Samples (39)
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| GSM314251 |
tissue type: germinating seed, coleoptile - rep1 |
| GSM314252 |
tissue type: germinating seed, coleoptile - rep2 |
| GSM314253 |
tissue type: germinating seed, coleoptile - rep3 |
| GSM314254 |
tissue type: germinating seed, root - rep1 |
| GSM314255 |
tissue type: germinating seed, root - rep2 |
| GSM314256 |
tissue type: germinating seed, root - rep3 |
| GSM314257 |
tissue type: germinating seed, embryo - rep1 |
| GSM314258 |
tissue type: germinating seed, embryo - rep2 |
| GSM314259 |
tissue type: germinating seed, embryo - rep3 |
| GSM314260 |
tissue type: seedling, root - rep1 |
| GSM314261 |
tissue type: seedling, root - rep2 |
| GSM314262 |
tissue type: seedling, root - rep3 |
| GSM314263 |
tissue type: seedling, crown - rep1 |
| GSM314264 |
tissue type: seedling, crown - rep2 |
| GSM314265 |
tissue type: seedling, crown - rep3 |
| GSM314266 |
tissue type: seedling, leaf - rep1 |
| GSM314267 |
tissue type: seedling, leaf - rep2 |
| GSM314268 |
tissue type: seedling, leaf - rep3 |
| GSM314269 |
tissue type: immature inflorescence - rep1 |
| GSM314270 |
tissue type: immature inflorescence - rep2 |
| GSM314271 |
tissue type: immature inflorescence - rep3 |
| GSM314272 |
tissue type: floral bracts, before anthesis - rep1 |
| GSM314273 |
tissue type: floral bracts, before anthesis - rep2 |
| GSM314274 |
tissue type: floral bracts, before anthesis - rep3 |
| GSM314275 |
tissue type: pistil, before anthesis - rep1 |
| GSM314276 |
tissue type: pistil, before anthesis - rep2 |
| GSM314277 |
tissue type: pistil, before anthesis - rep3 |
| GSM314278 |
tissue type: anthers, before anthesis - rep1 |
| GSM314279 |
tissue type: anthers, before anthesis - rep2 |
| GSM314280 |
tissue type: anthers, before anthesis - rep3 |
| GSM314281 |
tissue type: 3-5 DAP caryopsis - rep1 |
| GSM314282 |
tissue type: 3-5 DAP caryopsis - rep2 |
| GSM314283 |
tissue type: 3-5 DAP caryopsis - rep3 |
| GSM314284 |
tissue type: 22 DAP embryo - rep1 |
| GSM314285 |
tissue type: 22 DAP embryo - rep2 |
| GSM314286 |
tissue type: 22 DAP embryo - rep3 |
| GSM314287 |
tissue type: 22 DAP endosperm - rep1 |
| GSM314288 |
tissue type: 22 DAP endosperm - rep2 |
| GSM314289 |
tissue type: 22 DAP endosperm - rep3 |
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| Relations |
| BioProject |
PRJNA113259 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE12508_RAW.tar |
320.2 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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