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Status
Public on Dec 31, 2009
Title
Chicken 44K custom Agilent microarray (2nd version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Gallus gallus Manufacturer
Agilent
Manufacture protocol
Two-Color Microarray-Based Gene Expression Analysis
Contributor(s)
Zhou H , Zhu J , Chiang H , Li X , Wang Y Submission date
Jan 23, 2008
Last update date
Dec 31, 2009
Contact name
Huaijun Zhou
Organization name
Texas A&M University
Street address
Rm 418D Kleberg Center,Texas A&M University
City
College Station
State/province
TX
ZIP/Postal code
77843-2472
Country
USA
Samples (212)
GSM258818 , GSM258819 , GSM258820 , GSM258821 , GSM258824 , GSM258825
GSM258826 ,
GSM258827 ,
GSM258828 ,
GSM258829 ,
GSM258830 ,
GSM258832 ,
GSM258833 ,
GSM258834 ,
GSM258836 ,
GSM258838 ,
GSM258841 ,
GSM258846 ,
GSM258848 ,
GSM258850 ,
GSM258851 ,
GSM258852 ,
GSM258853 ,
GSM258854 ,
GSM346871 ,
GSM346872 ,
GSM346874 ,
GSM346875 ,
GSM346876 ,
GSM346877 ,
GSM346879 ,
GSM346880 ,
GSM346940 ,
GSM346968 ,
GSM346970 ,
GSM346972 ,
GSM346987 ,
GSM347026 ,
GSM347027 ,
GSM347028 ,
GSM461469 ,
GSM461470 ,
GSM461471 ,
GSM461472 ,
GSM461473 ,
GSM461474 ,
GSM461475 ,
GSM461476 ,
GSM461477 ,
GSM461478 ,
GSM461479 ,
GSM461480 ,
GSM461585 ,
GSM461586 ,
GSM461593 ,
GSM461661 ,
GSM461662 ,
GSM461663 ,
GSM461664 ,
GSM461665 ,
GSM461666 ,
GSM461667 ,
GSM461676 ,
GSM461677 ,
GSM518091 ,
GSM518092 ,
GSM518093 ,
GSM518094 ,
GSM518095 ,
GSM518096 ,
GSM518097 ,
GSM518098 ,
GSM518099 ,
GSM518100 ,
GSM518101 ,
GSM518102 ,
GSM543266 ,
GSM543267 ,
GSM543268 ,
GSM543269 ,
GSM543270 ,
GSM543271 ,
GSM543272 ,
GSM543273 ,
GSM543280 ,
GSM543281 ,
GSM543282 ,
GSM543283 ,
GSM627261 ,
GSM627262 ,
GSM627263 ,
GSM627264 ,
GSM627265 ,
GSM627266 ,
GSM627267 ,
GSM627268 ,
GSM627269 ,
GSM627270 ,
GSM627271 ,
GSM627272 ,
GSM627273 ,
GSM627274 ,
GSM627275 ,
GSM627276 ,
GSM627277 ,
GSM627278 ,
GSM627279 ,
GSM627280 ,
GSM627281 ,
GSM627282 ,
GSM627283 ,
GSM627284 ,
GSM627285 ,
GSM627286 ,
GSM627287 ,
GSM627288 ,
GSM627289 ,
GSM627290 ,
GSM627291 ,
GSM627292 ,
GSM627293 ,
GSM627294 ,
GSM627295 ,
GSM627296 ,
GSM627297 ,
GSM627298 ,
GSM627299 ,
GSM627300 ,
GSM627301 ,
GSM627302 ,
GSM627303 ,
GSM627304 ,
GSM627305 ,
GSM627306 ,
GSM627307 ,
GSM627308 ,
GSM627309 ,
GSM627310 ,
GSM627311 ,
GSM627312 ,
GSM627313 ,
GSM627314 ,
GSM627315 ,
GSM627316 ,
GSM627317 ,
GSM627318 ,
GSM627319 ,
GSM627320 ,
GSM627321 ,
GSM627322 ,
GSM627323 ,
GSM627324 ,
GSM627325 ,
GSM627326 ,
GSM627327 ,
GSM627328 ,
GSM627329 ,
GSM627330 ,
GSM627331 ,
GSM627332 ,
GSM778627 ,
GSM778628 ,
GSM778629 ,
GSM778630 ,
GSM778631 ,
GSM778632 ,
GSM778633 ,
GSM778634 ,
GSM778635 ,
GSM778636 ,
GSM778637 ,
GSM778638 ,
GSM778639 ,
GSM778640 ,
GSM778641 ,
GSM778642 ,
GSM778643 ,
GSM778644 ,
GSM778645 ,
GSM778646 ,
GSM778647 ,
GSM778648 ,
GSM778649 ,
GSM778650 ,
GSM778651 ,
GSM778652 ,
GSM778653 ,
GSM778654 ,
GSM778655 ,
GSM778656 ,
GSM778657 ,
GSM778658 ,
GSM778659 ,
GSM778660 ,
GSM778661 ,
GSM778662 ,
GSM879919 ,
GSM879925 ,
GSM879936 ,
GSM879937 ,
GSM992468 ,
GSM992469 ,
GSM992470 ,
GSM992471 ,
GSM992472 ,
GSM992473 ,
GSM992474 ,
GSM992475 ,
GSM992476 ,
GSM992477 ,
GSM992478 ,
GSM992479 Series (9)
GSE10257 Global gene expression profile of chicken cecal tonsil in response to campylobacter jejuni challenge in broiler lines
GSE14684 Gene expression profiling in Salmonella Typhimurium stimulated heterophils using a chicken 44K Agilent microarray
GSE18541 Genome-Wide Gene Expression Profiling Of Chicken Spleen Responding To Campylobacter jejuni Infection In Broilers
GSE20630 Transcriptional Profiling of Host Gene Expression in Chicken Embryo Lung Cells Infected with Laryngotracheitis Virus
GSE21817 Gene expression profiling between chicken tissues
GSE25511 Spleen transcriptome response to infection with avian pathogenic Escherichia coli in broiler chickens
GSE31387 Transcriptome Response of Leukocytes from Chickens Infected with Avian Pathogenic Escherichia coli Identifies Pathways Associated with Resistance
GSE38197 Gene expression profile of chicken lung in response to Avian influenza virus challenge in broiler chickens
GSE40376 Chemopreventive effect of flaxseed-enriched diet on ovarian cancer in laying hen.
Data table header descriptions ID Array_Index Index of probe on the array
Probe ID SEQUENCE The 60-mer oligo sequences spotted on the array
GB_ACC GenBank Accession number
Chromosal Location Description SPOT_ID
Data table ID Array_Index Probe ID SEQUENCE GB_ACC Chromosal Location Description SPOT_ID 1
20
*000748
GCTATATTTGCTCCTTCCCATCCCCAAACTTGCTCAACCTTTTAGTCTGATGCTTCTTTT
AJ719391 chr20:385261-389428
Q9CQT9 : (Q9CQT9) Protein C20orf24 homolog
2
21
A_87_P002469
GTTGTCTTCTTTCCTTCAGTCATTCTGCATTGTGCCTGCGCTCCTGTGCAAAAGAAAGAA
chr2:29327360-29327420
Unknown
TC221804
3
22
A_87_P040683
TTCTCTCTGGAGTTCTGTCAGACTACAGCTACACAATTTTGGTTTTGGTCTTTTTCTACT
BU393289 chr1:112313516-112313572
Unknown
4
23
A_87_P038925
TCTTCACCAGTATTGCAGAAGCAGTGACTGATACGCACCAGTGCAGATGATGTAGTCATT
CD735371 chr7:16903973-16904491
CD735371
5
24
A_87_P034912
TTTGTGGTTGAAACTGTTATCTGCAAAAAATCATGAAGCCCCTGTCCAGCTGTAACCTTC
BI393224 chr9:8259576-8259635
pgp1n.pk010.i21 Normalized Chicken Pituitary [BI393224]
6
25
A_87_P019200
GGTCTTAGAGGTTTGCCTAAAGAGGACAATACTAAGGGGGAACTCCAGCCTCCAAATAAA
CO771420 chr2:024957576-024957634
testis_EST02517 Testis cDNA Library Gallus gallus cDNA 3', mRNA sequence [CO771420]
7
26
*015272
TCCCTCTAGTTTCTCCTGATACCTTTGCATTTCATTCAGTATGGCGTGTTGTAGAAGTGA
BU379867 chrZ:5097871-5112394
no hits
8
27
*022785
ATGAAGACGAACATTATCCCTTGGACAACACAAGCAAAAGCTCTCATAGGACTTACCGAG
BU449338.1 chr14:8605804-8605850
gi|25938649|gb|BU449338.1|BU449338 603212736F1 CSEQRBN13 Gallus gallus cDNA clone ChEST194h10 5 , mRNA sequence
9
28
A_87_P016498
GGCTAAACCCAAGATTGCTTTCTTTATATAGTGGACTGAAAATCCCTGTAACCTGGCACT
CR386403 chr4:86271879-86271938
Gallus gallus finished cDNA, clone ChEST225h2. [CR386403]
10
29
*010857
CCCTACTTTATTAGTGCCTGTAAAGATCTACCTGGCAAATTCCTCTTGGGTTATCAGCCT
BI390565 chrUn:16057666-16060550
ENSGALP00000000200 : ENSGALP00000000200 pep:novel chromosome:WASHUC1:Un:16046321:16060717:1 gene:ENSGALG00000000146 transcript:ENSGALT00000000201
11
30
*007085
AGACAGTTGTTCAGTAATCCTACAGCAACCTGTGTGAGAGAAGGGTTGTAATCCTAACAA
CR389108 chrUn:57340-58408
XP_575939 : gi:62649917:ref:XP_575939.1: PREDICTED: similar to novel protein [Rattus norvegicus]
12
31
A_87_P001393
AACTGTACTGTGATTTTCAGAACCTGTTACCTTTGGTGCCGGATCTGCATTATTCAAATC
chr1:115664790-115664730
Unknown
TC224480
13
32
*017875
CCCAGGATCACGTTTCAAGCATTTTACATCATCTCTGGTTTTTATCTTCAGCTTTTCACT
BU486556 chr11:18352482-18353693
no hits
14
33
A_87_P021579
GCAGGCATTCAAGATTTCTGTCAGAGCACTGTGTAACGGAGACTATGACCGGACAATTAA
BX950559 chr1:8201259-8198849
Gallus gallus finished cDNA, clone ChEST563k2. [BX950559]
15
34
A_87_P005146
TGTCAATGGCCTGGGGTCCAATGGGCAAGGTCTGGTACAGAACCCACCCTTCTTTCTCCT
chr27:1372413-1372472
Q9BRH0 (Q9BRH0) LOC284058 protein, partial (48%) [TC204790]
TC204794
16
35
*000016
CAGTGCTGAACTTGTTGAGTGATTCTTGCTCCCGTTTGTACGTGGTGTTATTGAAATGTA
AB005619 chr3_random:528951-531555
O93482 : (O93482) Chromobox protein (CHCB3)
17
36
*023040
CTATGCACATGAATGGAGAACTCGTACTCAGGAAGGCGAGGAGCCTGCTCTATCAGTTCC
CB018310.1 chr18:9580608-9581085
gi|27593046|gb|CB018310.1|CB018310 pgn1c.pk019.n18 Chicken lymphoid cDNA library (pgn1c) Gallus gallus cDNA clone pgn1c.pk019.n18 5 similar to gb|AAH36947.1 Unknown (protein for MGC:46570) [Homo sapiens], mRNA sequence
18
37
*021195
AGCTGTCCTACAGAATTGTATGATGACACTCAATACATTGCTGCTCTAGGAATGAAGGCA
chr1:1-2
UL8
UL8
19
38
*016223
TATTTTTGTTAGATATTTGCTATGATTGAGATTTCACAGAACTGACATGTTGCTCTGGTG
BU437212 chr4:15398658-15399088
no hits
20
39
*001591
AGAACTGATTTCTCTGTCTTTCATAACACTGTATCTGCAATGGACCCTTCCTAGTTGGAC
AJ720417 chr5:20443093-20456821
Q92466 : (Q92466) DNA damage binding protein 2 (Damage-specific DNA binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2)
43803 7537 Kbytes .Supplementary data files not provided
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