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Status
Public on Jan 01, 2006
Title
Agilent Maize 21K v1.0
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Zea mays Manufacturer
Agilent
Manufacture protocol
21K 60-mer oligo probes were designed from the MaizeGDB EST contigs and synthesized in situ by an ink-jet printing method employing standard phosphoramidite chemistry on glass slides.
Support
glass
Coating
unknown
Description
25x75 mm in dimension.
Web link
http://www.chem.agilent.com/scripts/literaturepdf.asp?iWHID=40514 Citation(s)
11283592 Submission date
Nov 18, 2005
Last update date
Apr 12, 2008
Contact name
Jiong Ma
E-mail(s)
jiongm@stanford.edu Organization name
Stanford University
Department
Biological Sciences
Lab
Walbot
Street address
385 Serra Mall
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Samples (24)
GSM84387 , GSM84388 , GSM84389 , GSM84390 , GSM84391 , GSM84392
GSM84393 ,
GSM84394 ,
GSM84395 ,
GSM84396 ,
GSM84397 ,
GSM84398 ,
GSM84399 ,
GSM84400 ,
GSM84401 ,
GSM84402 ,
GSM84403 ,
GSM84404 ,
GSM84405 ,
GSM84406 ,
GSM84407 ,
GSM84408 ,
GSM84409 ,
GSM84410 Series (1)
GSE3640 Comparative Transcriptome Profiling of Maize Lines
Data table header descriptions ID PROBE_UID unique probe ID to identify each feature; used for subsequent analysis instead of ID.
FEA_ACC The MaizeGDB or GenBank ACC# of the sequence used for design of the probe.
ROW Row index on the array
COL Column index on the array
GENE_MATCH TIGR Maize GeneIndex build 15.0 (Sept 2004) contigs and ESTs from GenBank matched to the probe sequences
GB_ACC SPOT_ID SENSE Putative orientation of the probe on a given gene: +, sense; -, antisense; NA, not determined.
START Start position of the probe on the GENE_MATCH sequence
END End position of the probe on the GENE_MATCH sequence
SEQUENCE Sequence of the probe.
Data table ID PROBE_UID FEA_ACC ROW COL GENE_MATCH GB_ACC SPOT_ID SENSE START END SEQUENCE 1
4
ZMtuc03-08-11.23422_701
2
2
TC265045
TIGR:TC265045
+
701
760
TGGTACTTGACATGCAGAAGGATGCAAAGTCCTTCACCTTGTTTACATTACCACAAGTCA
2
5
ZMtuc03-04-07.3551_262
2
3
TC274866
TIGR:TC274866
+
262
321
GAATTGATCTCAAAGTGATGCTGGTGGATGAACCTAAGATGGATGATCTGATCGAGTGCC
3
6
AI665410.2_111
2
4
AI665410
AI665410
NA
111
170
AAAGCATGTGAACCAAAGTTATACACAAGGACAAGGAACAAACGAATCGTTTGGCCCGGC
4
7
ZMtuc03-08-11.19545_1226
2
5
TC261302
TIGR:TC261302
+
1226
1285
TCTTCCAATAAAACAGCAATGTCTATCTGTAAACATAGTAATTCGCATGAATTGCTTCGC
5
8
BG360704.1_287
2
6
BG360704
BG360704
+
287
346
ATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGAGTTAATGGTG
6
9
BE128869.1_555
2
7
TC274315
TIGR:TC274315
+
586
645
GATAGCAAAACTAAGCTGAAGTATGTGTAGGTAGTACATAGGAAGAAACAAGGTGCCACG
7
10
ZMtuc03-08-11.11590_537
2
8
TC261076
TIGR:TC261076
-
1048
989
TCCTTAGCCTCTGAAGATACACAAGGAGATGAAGGGAATGCCAAATCCACCCTAACTATC
8
11
ZMtuc03-08-11.9944_583
2
9
TC260464
TIGR:TC260464
+
583
642
TAATGTTGCTGCTGATGCCAGATGCCAAGTAAAGGAGAAGGAAGTGGAGATCAAGGAAAT
9
12
ZMtuc02-12-23.12744_413
2
10
TC264786
TIGR:TC264786
-
184
125
TTATGGGCCACTCAGTGAGATGTTATATACGGGTTCCATGCTATCCCCACGGTTCTTTAA
10
13
ZMtuc03-08-11.13170_478
2
11
TC255392
TIGR:TC255392
-
164
105
TGAAGCTGCAATGAAGTTTTGTTTCCGCAGTGAGATCCAACGGCATCCATACACCATCTT
11
14
ZMtuc03-08-11.21054_83
2
12
ZMtuc03-08-11.21054
ZMtuc03-08-11.21054
NA
83
142
GACAAAGGCAAACACACACAACACTGACCAGAGTTTACCAAGCAACGTACCGAAGTACAT
12
15
ZMtuc03-08-11.22007_647
2
13
TC273759
TIGR:TC273759
-
347
288
AAGACGATTAACAGCACGTCTTGATCTTACAAGTTCCTTAGCAAGAGCCTTTGCAGATCC
13
16
ZMtuc03-08-11.4178_853
2
14
TC255048
TIGR:TC255048
+
853
912
CGAGCAGCTTAACATGGATGACGTTTACATTTCCTATCTTCCGCTTGCTCATATATTTGA
14
17
AW065234.1_148
2
15
AW065234.1
AW065234.1
NA
148
207
ATGGGACCCGTGTTTTTTAGACTCACAATAAAGCCGGTTTGTGTTTGTGCCTACTCAAAA
15
18
AI670541.1_555
2
16
AI670541
AI670541
NA
555
614
GTTTCTTGCCCTAGCTACTAAGAAGGTTACTTTGACGAAGGTTCTGGTTCTTAACACGCA
16
19
ZMtuc03-08-11.22331_795
2
17
TC264325
TIGR:TC264325
+
796
855
AATACTTTTTGTGGATGCTACTTTCTTAGCTTGAATATGGTCATGTAAACCACTACAGAC
17
20
ZMtuc03-08-11.12534_1539
2
18
TC263720
TIGR:TC263720
+
1539
1598
AGCTGTGGAGTGTTGTTCAGTGTGAGATTGGCCTTTCTTGGTTGCATCAGCTTGTACATT
18
21
ZMtuc03-04-07.7699_523
2
19
TC263603
TIGR:TC263603
-
343
284
CGTGGTTTCTGTTACTATCATAAGCCAGAGCGGACCAGTTGGCTGCAGCATTTTTATTCA
19
22
BG349364.1_509
2
20
BG349364
BG349364
+
509
568
CTCGCAAGCAGGGCCTGGCGGATATCATATCATACAATACGATTATTGCTGCATATGCAA
20
23
ZMtuc03-08-11.13965_309
2
21
TC261451
TIGR:TC261451
-
612
553
ACAGCACAGCGCAACCAATTTGTTCCTTTTGATTGCTCTTCATCATACAAGAGGCTGCAG
21939 2882 Kbytes .Supplementary data files not provided
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