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Platform GPL18315 Query DataSets for GPL18315
Status Public on Nov 07, 2014
Title Agilent-030025 Texas-Adelaide Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Equus caballus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description WG 400K

Arrays of this design have barcodes that begin with 16030025 or 2530025.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Feb 21, 2014
Last update date Nov 07, 2014
Contact name Sharmila Ghosh
E-mail(s) sghosh@cvm.tamu.edu
Phone 9794584275
Organization name Texas A&M University
Department VIBS
Street address VMS Building, Rm 107, 4458 TAMUS
City College Station
State/province TX
ZIP/Postal code 77843
Country USA
 
Samples (62) GSM1332940, GSM1332941, GSM1332942, GSM1332943, GSM1332944, GSM1332945 
Series (2)
GSE55266 A composite map of copy number variable (CNV) regions in the horse genome and the discovery of CNVs involved in equine XY disorders of sexual development
GSE63033 Analysis of Genomic Copy Number Variation in Equine Recurrent Airway Obstruction

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION
1 528 796 DarkCorner pos
2 528 794 DarkCorner pos
3 528 792 DarkCorner pos
4 528 790 G_3_116301807 FALSE NC_009146 194246382|ref|NC_009146 chr3:116301807-116301866
5 528 788 E_8_29007264 FALSE XM_001493927 ULK1 194214432|ref|XM_001493927 chr8:29007264-29007323
6 528 786 G_11_30353301 FALSE NC_009154 194246359|ref|NC_009154 chr11:30353301-30353360
7 528 784 G_27_12062438 FALSE NC_009170 194246379|ref|NC_009170 chr27:12062438-12062497
8 528 782 G_6_19117525 FALSE NC_009149 194246387|ref|NC_009149 chr6:19117525-19117584
9 528 780 G_25_37707111 FALSE NC_009168 194246377|ref|NC_009168 chr25:37707111-37707170
10 528 778 E_1_162023212 FALSE XM_001489336 LOC100054903 194207172|ref|XM_001489336 chr1:162023212-162023271
11 528 776 Gs_6_82752388 FALSE NC_009149 194246387|ref|NC_009149 chr6:82752388-82752447
12 528 774 E_14_35036812 FALSE XM_001503958 LOC100061298 194219768|ref|XM_001503958 chr14:35036812-35036871
13 528 772 G_6_67441559 FALSE NC_009149 194246387|ref|NC_009149 chr6:67441559-67441618
14 528 770 G_25_13574327 FALSE NC_009168 194246377|ref|NC_009168 chr25:13574327-13574386
15 528 768 E_3_50536097 FALSE XM_001494274 LOC100062841 149701719|ref|XM_001494274 chr3:50536097-50536156
16 528 766 Gs_5_97127074 FALSE NC_009148 194246386|ref|NC_009148 chr5:97127074-97127133
17 528 764 G_X_76178263 FALSE NC_009175 194246402|ref|NC_009175 chrX:76178263-76178322
18 528 762 G_28_42589362 FALSE NC_009171 194246380|ref|NC_009171 chr28:42589362-42589421
19 528 760 G_10_26285553 FALSE NC_009153 194246358|ref|NC_009153 chr10:26285553-26285612
20 528 758 G_1_115587089 FALSE NC_009144 194246357|ref|NC_009144 chr1:115587089-115587148

Total number of rows: 420288

Table truncated, full table size 39359 Kbytes.




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