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Status
Public on Nov 07, 2014
Title
Agilent-030025 Texas-Adelaide Array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Equus caballus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
WG 400K Arrays of this design have barcodes that begin with 16030025 or 2530025. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Feb 21, 2014
Last update date
Nov 07, 2014
Contact name
Sharmila Ghosh
E-mail(s)
sghosh@cvm.tamu.edu
Phone
9794584275
Organization name
Texas A&M University
Department
VIBS
Street address
VMS Building, Rm 107, 4458 TAMUS
City
College Station
State/province
TX
ZIP/Postal code
77843
Country
USA
Samples (62)
GSM1332940 , GSM1332941 , GSM1332942 , GSM1332943 , GSM1332944 , GSM1332945
GSM1332946 ,
GSM1332947 ,
GSM1332948 ,
GSM1332949 ,
GSM1332950 ,
GSM1332951 ,
GSM1332952 ,
GSM1332953 ,
GSM1332954 ,
GSM1332955 ,
GSM1332956 ,
GSM1332957 ,
GSM1332958 ,
GSM1332959 ,
GSM1332960 ,
GSM1332961 ,
GSM1332962 ,
GSM1332963 ,
GSM1332964 ,
GSM1332965 ,
GSM1332966 ,
GSM1332967 ,
GSM1332968 ,
GSM1332969 ,
GSM1332970 ,
GSM1332971 ,
GSM1332972 ,
GSM1332973 ,
GSM1332974 ,
GSM1332975 ,
GSM1332976 ,
GSM1332977 ,
GSM1332978 ,
GSM1332979 ,
GSM1332980 ,
GSM1332981 ,
GSM1332982 ,
GSM1332983 ,
GSM1538411 ,
GSM1538412 ,
GSM1538413 ,
GSM1538414 ,
GSM1538415 ,
GSM1538416 ,
GSM1538417 ,
GSM1538418 ,
GSM1538419 ,
GSM1538420 ,
GSM1538421 ,
GSM1538422 ,
GSM1538423 ,
GSM1538424 ,
GSM1538425 ,
GSM1538426 ,
GSM1538427 ,
GSM1538428
Series (2)
GSE55266
A composite map of copy number variable (CNV) regions in the horse genome and the discovery of CNVs involved in equine XY disorders of sexual development
GSE63033
Analysis of Genomic Copy Number Variation in Equine Recurrent Airway Obstruction
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBank Accession number
GENE_SYMBOL
Gene Symbol
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
Data table
ID
COL
ROW
SPOT_ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
ACCESSION_STRING
CHROMOSOMAL_LOCATION
DESCRIPTION
1
528
796
DarkCorner
pos
2
528
794
DarkCorner
pos
3
528
792
DarkCorner
pos
4
528
790
G_3_116301807
FALSE
NC_009146
194246382|ref|NC_009146
chr3:116301807-116301866
5
528
788
E_8_29007264
FALSE
XM_001493927
ULK1
194214432|ref|XM_001493927
chr8:29007264-29007323
6
528
786
G_11_30353301
FALSE
NC_009154
194246359|ref|NC_009154
chr11:30353301-30353360
7
528
784
G_27_12062438
FALSE
NC_009170
194246379|ref|NC_009170
chr27:12062438-12062497
8
528
782
G_6_19117525
FALSE
NC_009149
194246387|ref|NC_009149
chr6:19117525-19117584
9
528
780
G_25_37707111
FALSE
NC_009168
194246377|ref|NC_009168
chr25:37707111-37707170
10
528
778
E_1_162023212
FALSE
XM_001489336
LOC100054903
194207172|ref|XM_001489336
chr1:162023212-162023271
11
528
776
Gs_6_82752388
FALSE
NC_009149
194246387|ref|NC_009149
chr6:82752388-82752447
12
528
774
E_14_35036812
FALSE
XM_001503958
LOC100061298
194219768|ref|XM_001503958
chr14:35036812-35036871
13
528
772
G_6_67441559
FALSE
NC_009149
194246387|ref|NC_009149
chr6:67441559-67441618
14
528
770
G_25_13574327
FALSE
NC_009168
194246377|ref|NC_009168
chr25:13574327-13574386
15
528
768
E_3_50536097
FALSE
XM_001494274
LOC100062841
149701719|ref|XM_001494274
chr3:50536097-50536156
16
528
766
Gs_5_97127074
FALSE
NC_009148
194246386|ref|NC_009148
chr5:97127074-97127133
17
528
764
G_X_76178263
FALSE
NC_009175
194246402|ref|NC_009175
chrX:76178263-76178322
18
528
762
G_28_42589362
FALSE
NC_009171
194246380|ref|NC_009171
chr28:42589362-42589421
19
528
760
G_10_26285553
FALSE
NC_009153
194246358|ref|NC_009153
chr10:26285553-26285612
20
528
758
G_1_115587089
FALSE
NC_009144
194246357|ref|NC_009144
chr1:115587089-115587148
Total number of rows: 420288 Table truncated, full table size 39359 Kbytes .
Supplementary data files not provided