GEO help: Mouse over screen elements for information.
Status
Public on Mar 31, 2011
Title
NimbleGen Dog Whole-Genome CGH 2.1M Tiling Array (CanFam2_CGH_HX1)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Canis lupus familiaris Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
gw2.1 genome-wide aCGH, with probes spread across the canFam2 genome assembly with 2164507 probes.
Submission date
Dec 18, 2010
Last update date
Mar 31, 2011
Contact name
Tom Nicholas
E-mail(s)
tjn3@u.washington.edu Organization name
University of Washington
Street address
Foege Building S-250, Box 355065 3720 15th Ave NE
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Samples (64)
GSM642654 , GSM642655 , GSM642656 , GSM642657 , GSM642658 , GSM642659
GSM642660 ,
GSM642661 ,
GSM642662 ,
GSM642663 ,
GSM642664 ,
GSM988393 ,
GSM988394 ,
GSM988395 ,
GSM988396 ,
GSM988397 ,
GSM988398 ,
GSM988399 ,
GSM988400 ,
GSM988401 ,
GSM988402 ,
GSM988403 ,
GSM988404 ,
GSM988405 ,
GSM988406 ,
GSM988407 ,
GSM988408 ,
GSM988409 ,
GSM988410 ,
GSM988411 ,
GSM988412 ,
GSM988413 ,
GSM988414 ,
GSM988415 ,
GSM988416 ,
GSM988417 ,
GSM988418 ,
GSM988419 ,
GSM988420 ,
GSM988421 ,
GSM988422 ,
GSM988423 ,
GSM988424 ,
GSM988425 ,
GSM988426 ,
GSM988427 ,
GSM988428 ,
GSM988429 ,
GSM988430 ,
GSM988431 ,
GSM988432 ,
GSM988433 ,
GSM988434 ,
GSM988435 ,
GSM988436 ,
GSM988437 ,
GSM988438 ,
GSM988439 ,
GSM988440 ,
GSM988441 ,
GSM988442 ,
GSM988443 ,
GSM988444 ,
GSM988445 Series (2)
GSE26170 Genome-wide CNVs within and between breeds
GSE40210 Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample
Data table header descriptions ID CHROMOSOME chromosomal location of the oligonucleotide probe
RANGE_GB chromosome ACCESSION.VERSION
RANGE_START start position (relative to RANGE_GB)
RANGE_END end position (relative to RANGE_GB)
SEQUENCE probe sequence
SPOT_ID chrM
Data table ID CHROMOSOME RANGE_GB RANGE_START RANGE_END SEQUENCE SPOT_ID CHR01FS003000891
chr1
NC_006583.2
3000891
3000941
AACAATGCAAACAGGAGGGTATACCCAGGTGCAGTAGATTGGTTATCTGG
CHR01FS003002366
chr1
NC_006583.2
3002366
3002416
AACAATGCAAACAGGAGGGTATACCCAGGTGCAGTAGATTGGTTATCTGG
CHR01FS003006126
chr1
NC_006583.2
3006126
3006176
ACCTTCTCACTTCCATAGGAATGGGGCTAGTTGACAGCGGGCTTCAAGAC
CHR01FS003008426
chr1
NC_006583.2
3008426
3008476
GCATCCTACCTGAGTGTAGACGTAGCTAACACCCTCATATTAGTGGCTGG
CHR01FS003009706
chr1
NC_006583.2
3009706
3009756
AGGCTTCTGAGTCGCAAGTTAATAATGGAGACCTGGGCGGTATCTCCAGG
CHR01FS003015159
chr1
NC_006583.2
3015159
3015209
GAGGGAGCCCTCTTACAGCTGGATGTGACCTCCTGGGCATGCCCCACAGA
CHR01FS003019675
chr1
NC_006583.2
3019675
3019725
CAAGGGTATGGTTTGCATCTGCCTCATTATGTCCCCTGGCCACACCAAGG
CHR01FS003021107
chr1
NC_006583.2
3021107
3021157
ACTGCATGTACACTGCGCTTCTAAGAGGCCTAGGTTCGTTGCATGACAGA
CHR01FS003022577
chr1
NC_006583.2
3022577
3022627
ACAGAAGGGTTGTGAGAGGTTAGTGGAAGTTGCCGGCCGACATGACTAGT
CHR01FS003029599
chr1
NC_006583.2
3029599
3029649
GCTGGGAGAAGTTGTGGCAATAGCATGTATAACCACTGAGCCTGAACTCA
CHR01FS003030794
chr1
NC_006583.2
3030794
3030845
AGTGAGTTTTGCATGTCTTTACCAGAGACGTTTGTCTGAAGGCTTGTGAGT
CHR01FS003031929
chr1
NC_006583.2
3031929
3031979
GTGGGTAGCAGATCTTTGCCTCCCATGTATACACAATTCTGAGAGTTTAG
CHR01FS003032959
chr1
NC_006583.2
3032959
3033010
TACACTTCGCTCTTAACAAGTTAGGCTCGATGGGTTACTGAAGAGTTGTGA
CHR01FS003038014
chr1
NC_006583.2
3038014
3038064
AGTGTGGATGCGGTCCCCACATCTTTCTTAGGCCCTAACAAGGCTGGGGT
CHR01FS003039559
chr1
NC_006583.2
3039559
3039609
CCAAATCCCAGGTGAGGCCCGGGGGGAGTGGGACTGGAGTCACTAGGTAC
CHR01FS003042089
chr1
NC_006583.2
3042089
3042141
GAAGGTGCCAGCCCACACGACTAGTGTCTCATATATCAATCTAGAGATATTT
CHR01FS003043866
chr1
NC_006583.2
3043866
3043916
TGCAGCATCGAATCCCACTGCACAGCCACCCAGGAGGACTGAGCTCCAGG
CHR01FS003044907
chr1
NC_006583.2
3044907
3044957
TTGGGACCGCTACGGGGTCGGGTGAGGCTCCTGGGCTGGGGGGGGGTTTG
CHR01FS003046077
chr1
NC_006583.2
3046077
3046127
ACTAATGGGATCCATTAGTCTGGCCGGGCCTGGATTCTGGCTCTAGGCTG
CHR01FS003047027
chr1
NC_006583.2
3047027
3047077
GTCAGTGTGGTCCTGGAAGAGAGGTCAGGGCAGCAGGCCCTGGTCTTGTG
2164507 229971 Kbytes .Supplementary file Size Download File type/resource GPL11335_CanFam2_CGH_HX1.ndf.gz
118.2 Mb
(ftp) (http) NDF
GPL11335_CanFam2_CGH_HX1.pos.gz
23.9 Mb
(ftp) (http) POS
Less...
More...