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    sea scheggia [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 660776, updated on 10-May-2024

    Summary

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    Gene symbol
    sea
    Gene description
    scheggia
    Locus tag
    TcasGA2_TC015070
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 8 NC_087401.1 (13698679..13702717)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG6 NC_007421.3 (3769574..3773574, complement)

    Chromosome 8 - NC_087401.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103313410 Neighboring gene neutral amino acid transporter 9 Neighboring gene uncharacterized LOC135267024 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 Neighboring gene Phosphatidylinositol glycan anchor biosynthesis class L

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables citrate secondary active transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial citrate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative tricarboxylate transport protein, mitochondrial
    Names
    AUGUSTUS-3.0.2_15070
    Calcium-binding mitochondrial carrier protein Aralar1-like Protein
    GLEAN_15070

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087401.1 Reference icTriCast1.1 Primary Assembly

      Range
      13698679..13702717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_966981.5 → XP_972074.1  putative tricarboxylate transport protein, mitochondrial

      See identical proteins and their annotated locations for XP_972074.1

      UniProtKB/TrEMBL
      D2A623
      Conserved Domains (2) summary
      PTZ00169
      Location:30 → 309
      PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
      pfam00153
      Location:30 → 115
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein Strain
    Heading Accession and Version

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