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    Tet Ten-Eleven Translocation (TET) family protein [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 103312925, updated on 15-Apr-2024

    Summary

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    Gene symbol
    Tet
    Gene description
    Ten-Eleven Translocation (TET) family protein
    Locus tag
    TcasGA2_TC013796
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 5 NC_087398.1 (11482861..11529615)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (3876030..3921322, complement)

    Chromosome 5 - NC_087398.1Genomic Context describing neighboring genes Neighboring gene target of Poxn Neighboring gene bves Neighboring gene knockout Neighboring gene flower

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5-methylcytosine dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 5-methylcytosine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methylcytosine dioxygenase TET
    Names
    AUGUSTUS-3.0.2_33041
    DNA N6-methyl adenine demethylase
    GLEAN_13796
    GLEAN_13798

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087398.1 Reference icTriCast1.1 Primary Assembly

      Range
      11482861..11529615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008194802.3 → XP_008193024.1  methylcytosine dioxygenase TET isoform X1

      UniProtKB/TrEMBL
      A0A139WHW1
      Conserved Domains (3) summary
      pfam02008
      Location:387 → 427
      zf-CXXC; CXXC zinc finger domain
      pfam07223
      Location:491 → 716
      DUF1421; Protein of unknown function (DUF1421)
      pfam12851
      Location:973 → 1095
      Tet_JBP; Oxygenase domain of the 2OGFeDO superfamily

    2. XM_015980013.2 → XP_015835499.1  methylcytosine dioxygenase TET isoform X1

      UniProtKB/TrEMBL
      A0A139WHW1
      Conserved Domains (3) summary
      pfam02008
      Location:387 → 427
      zf-CXXC; CXXC zinc finger domain
      pfam07223
      Location:491 → 716
      DUF1421; Protein of unknown function (DUF1421)
      pfam12851
      Location:973 → 1095
      Tet_JBP; Oxygenase domain of the 2OGFeDO superfamily

    3. XM_015980016.2 → XP_015835502.1  methylcytosine dioxygenase TET isoform X2

      Conserved Domains (3) summary
      pfam02008
      Location:387 → 427
      zf-CXXC; CXXC zinc finger domain
      pfam07223
      Location:467 → 692
      DUF1421; Protein of unknown function (DUF1421)
      pfam12851
      Location:949 → 1071
      Tet_JBP; Oxygenase domain of the 2OGFeDO superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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