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    Ciao1 cytosolic iron-sulfur assembly component 1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 660564, updated on 19-Jun-2024

    Summary

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    Gene symbol
    Ciao1
    Gene description
    cytosolic iron-sulfur assembly component 1
    Locus tag
    TcasGA2_TC011681
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 2 NC_087395.1 (25660861..25663314, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG9 NC_007424.3 (15120003..15122397, complement)

    Chromosome 2 - NC_087395.1Genomic Context describing neighboring genes Neighboring gene peroxisomal acyl-coenzyme A oxidase 3 Neighboring gene transmembrane protein 65 Neighboring gene protein CNPPD1 Neighboring gene A-kinase anchoring protein pkaap Neighboring gene sugar transporter SWEET1 Neighboring gene uncharacterized LOC135265320

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in iron-sulfur cluster assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cytosolic [4Fe-4S] assembly targeting complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NIF3-like protein 1; probable cytosolic iron-sulfur protein assembly protein Ciao1
    Names
    AUGUSTUS-3.0.2_31250
    GLEAN_11681
    putative cytosolic iron-sulfur protein assembly protein Ciao1-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087395.1 Reference icTriCast1.1 Primary Assembly

      Range
      25660861..25663314 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_966786.4 → XP_971879.2  NIF3-like protein 1 isoform X2

      Conserved Domains (1) summary
      pfam01784
      Location:50 → 287
      NIF3; NIF3 (NGG1p interacting factor 3)

    2. XM_966841.5 → XP_971934.2  probable cytosolic iron-sulfur protein assembly protein Ciao1 isoform X1

      Conserved Domains (3) summary
      COG2319
      Location:65 → 381
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:70 → 380
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:74 → 115
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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