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    Ltn1 Listerin E3 ubiquitin protein ligase 1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 657391, updated on 12-Apr-2024

    Summary

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    Gene symbol
    Ltn1
    Gene description
    Listerin E3 ubiquitin protein ligase 1
    Locus tag
    TcasGA2_TC011290
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 7 NC_087400.1 (8608623..8632139)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG10 NC_007425.3 (2257831..2279207)

    Chromosome 7 - NC_087400.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC657163 Neighboring gene Secretion-associated Ras-related 1 Neighboring gene 3-hydroxyisobutyryl-CoA hydrolase Neighboring gene Ubiquitin protein ligase E3A Neighboring gene uncharacterized LOC103314237 Neighboring gene uncharacterized LOC107398748

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribosomal large subunit binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rescue of stalled ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosome-associated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RQC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase listerin
    Names
    AUGUSTUS-3.0.2_11290
    E3 ubiquitin-protein ligase listerin-like Protein
    GLEAN_11290

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087400.1 Reference icTriCast1.1 Primary Assembly

      Range
      8608623..8632139
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008199647.3 → XP_008197869.1  E3 ubiquitin-protein ligase listerin isoform X1

      Conserved Domains (2) summary
      pfam12678
      Location:1581 → 1650
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:1601 → 1650
      zf-RING_2; Ring finger domain

    2. XM_008199652.3 → XP_008197874.1  E3 ubiquitin-protein ligase listerin isoform X2

      UniProtKB/TrEMBL
      D6X3R8
      Conserved Domains (2) summary
      pfam12678
      Location:1580 → 1649
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:1600 → 1649
      zf-RING_2; Ring finger domain
    Nucleotide Protein Strain
    Heading Accession and Version

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