U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Prp39 pre-mRNA processing factor 39 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 658885, updated on 12-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Prp39
    Gene description
    pre-mRNA processing factor 39
    Locus tag
    TcasGA2_TC009607
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (21567224..21571496, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (3213809..3218042)

    Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene Rox8 Neighboring gene uncharacterized LOC135265653 Neighboring gene uncharacterized LOC135265652 Neighboring gene Gcn2 Neighboring gene YME1 like ATPase Neighboring gene uncharacterized LOC658740

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pre-mRNA 5'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of commitment complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    pre-mRNA-processing factor 39
    Names
    AUGUSTUS-3.0.2_09607
    GLEAN_09607
    Pre-mRNA-processing factor 39-like Protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

      Range
      21567224..21571496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008197183.2 → XP_008195405.1  pre-mRNA-processing factor 39 isoform X2

      Conserved Domains (5) summary
      smart00386
      Location:270 → 302
      HAT; HAT (Half-A-TPR) repeats
      sd00006
      Location:619 → 646
      TPR; TPR repeat [structural motif]
      pfam05843
      Location:312 → 374
      Suf; Suppressor of forked protein (Suf)
      pfam12810
      Location:797 → 858
      Gly_rich; Glycine rich protein
      pfam14559
      Location:670 → 708
      TPR_19; Tetratricopeptide repeat

    2. XM_008197184.2 → XP_008195406.1  pre-mRNA-processing factor 39 isoform X3

      UniProtKB/TrEMBL
      D6WSZ2
      Conserved Domains (4) summary
      smart00386
      Location:271 → 303
      HAT; HAT (Half-A-TPR) repeats
      sd00006
      Location:620 → 647
      TPR; TPR repeat [structural motif]
      pfam05843
      Location:313 → 375
      Suf; Suppressor of forked protein (Suf)
      pfam14559
      Location:671 → 709
      TPR_19; Tetratricopeptide repeat

    3. XM_965236.3 → XP_970329.1  pre-mRNA-processing factor 39 isoform X1

      See identical proteins and their annotated locations for XP_970329.1

      Conserved Domains (5) summary
      smart00386
      Location:271 → 303
      HAT; HAT (Half-A-TPR) repeats
      sd00006
      Location:620 → 647
      TPR; TPR repeat [structural motif]
      pfam05843
      Location:313 → 375
      Suf; Suppressor of forked protein (Suf)
      pfam12810
      Location:798 → 859
      Gly_rich; Glycine rich protein
      pfam14559
      Location:671 → 709
      TPR_19; Tetratricopeptide repeat
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases