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    LOC662228 aromatic amino acid aminotransferase DDB_G0287711 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 662228, updated on 19-Apr-2024

    Summary

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    Gene symbol
    LOC662228
    Gene description
    aromatic amino acid aminotransferase DDB_G0287711
    Locus tag
    TcasGA2_TC008927
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (12684631..12686778, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (12036816..12038954)

    Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene glucose dehydrogenase [FAD, quinone] Neighboring gene orthopedia Neighboring gene uncharacterized LOC135265639 Neighboring gene retinal homeobox Neighboring gene aristaless-related homeobox protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables kynurenine-oxoglutarate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alpha-amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aromatic amino acid aminotransferase DDB_G0287711
    Names
    AUGUSTUS-3.0.2_08927
    Aromatic amino acid aminotransferase DDB_G0287711-like Protein
    GLEAN_08927

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

      Range
      12684631..12686778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_968340.4 → XP_973433.1  aromatic amino acid aminotransferase DDB_G0287711

      See identical proteins and their annotated locations for XP_973433.1

      UniProtKB/TrEMBL
      D6WQD2
      Conserved Domains (2) summary
      cd00609
      Location:36 → 416
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      COG0436
      Location:27 → 420
      AspB; Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases