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    Ndf Nucleosome-destabilizing factor [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 103312684, updated on 12-Apr-2024

    Summary

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    Gene symbol
    Ndf
    Gene description
    Nucleosome-destabilizing factor
    Locus tag
    TcasGA2_TC007358
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 9 NC_087402.1 (5888171..5904861, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG4 NC_007419.2 (5744145..5760855, complement)

    Chromosome 9 - NC_087402.1Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S2 Neighboring gene lilliputian Neighboring gene uncharacterized LOC664337 Neighboring gene titin homolog Neighboring gene Plenty of SH3s

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytokine-like nuclear factor N-PAC
    Names
    AUGUSTUS-3.0.2_07359
    GLEAN_07358
    GLEAN_07359
    Putative oxidoreductase GLYR1 homolog-like Protein
    Putative oxidoreductase GLYR1-like Protein
    putative oxidoreductase GLYR1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087402.1 Reference icTriCast1.1 Primary Assembly

      Range
      5888171..5904861 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008193987.3 → XP_008192209.1  cytokine-like nuclear factor N-PAC

      Conserved Domains (4) summary
      cd05836
      Location:5 → 89
      N_Pac_NP60; The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the ...
      COG2084
      Location:203 → 493
      MmsB; 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Lipid transport and metabolism]
      pfam03446
      Location:205 → 375
      NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase
      pfam14833
      Location:378 → 493
      NAD_binding_11; NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases