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    AGL19 AGAMOUS-like 19 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828394, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AGL19
    Gene description
    AGAMOUS-like 19
    Primary source
    Araport:AT4G22950
    Locus tag
    AT4G22950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGAMOUS-like 19; F7H19.130; F7H19_130; GL19
    Summary
    MADS-box protein AGL19
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (12023824..12028004, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene non-yellowing 1 Neighboring gene pyrimidin 4 Neighboring gene Protein kinase superfamily protein Neighboring gene FAM63A-like protein (DUF544) Neighboring gene separase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Polycomb-group proteins repress the floral activator AGL19 in the FLC-independent vernalization pathway. Schönrock N, et al. Genes Dev, 2006 Jun 15. PMID 16778081, Free PMC Article
    2. Arabidopsis histone deacetylase HDA9 regulates flowering time through repression of AGL19. Kim W, et al. Biochem Biophys Res Commun, 2013 Mar 8. PMID 23237803
    3. Repression of flowering under a noninductive photoperiod by the HDA9-AGL19-FT module in Arabidopsis. Kang MJ, et al. New Phytol, 2015 Apr. PMID 25406502
    4. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. de Folter S, et al. Plant Cell, 2005 May. PMID 15805477, Free PMC Article
    5. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Parenicová L, et al. Plant Cell, 2003 Jul. PMID 12837945, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. HDA9 prevents precocious flowering under SD conditions by curbing the hyperactivation of AGL19, an upstream activator of FT, through resetting the local chromatin environment.
      Title: Repression of flowering under a noninductive photoperiod by the HDA9-AGL19-FT module in Arabidopsis.
    2. The data indicate thatHDA9 represses flowering by repressing AGL19 gene expressionindependently of CONSTANS or FLC pathways.
      Title: Arabidopsis histone deacetylase HDA9 regulates flowering time through repression of AGL19.
    3. AGL19 expression is maintained at very low levels by the PcG proteins MSI1, CLF, and EMF2, and AGL19 is partly responsible for the early flowering phenotype of clf mutants.
      Title: Polycomb-group proteins repress the floral activator AGL19 in the FLC-independent vernalization pathway.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001341568.1
    NM_001341569.1
    NM_118424.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of timing of transition from vegetative to reproductive phase IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vernalization response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AGAMOUS-like 19
    NP_001320037.1
    • AGAMOUS-like 19 (AGL19); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 14 (TAIR:AT4G11880.1); Has 7291 Blast hits to 7288 proteins in 921 species: Archae - 2; Bacteria - 15; Metazoa - 646; Fungi - 323; Plants - 6182; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12023824..12028004 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341568.1 → NP_001320037.1  AGAMOUS-like 19 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82743
      UniProtKB/TrEMBL
      A0A178V3F3, A0A5S9XV27
      Conserved Domains (2) summary
      cd00265
      Location:3 → 70
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:84 → 170
      K-box; K-box region

    2. NM_001341569.1 → NP_001328192.1  AGAMOUS-like 19 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3X0
      Conserved Domains (2) summary
      cd00265
      Location:3 → 70
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:84 → 171
      K-box; K-box region

    3. NM_118424.2 → NP_194026.1  AGAMOUS-like 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194026.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82743
      UniProtKB/TrEMBL
      A0A178V3F3, A0A5S9XV27
      Conserved Domains (2) summary
      cd00265
      Location:3 → 70
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:84 → 170
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82743.1

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