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    TMPRSS11BNL TMPRSS11B N-terminal like (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 401136, updated on 10-Oct-2023

    Summary

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    Official Symbol
    TMPRSS11BNLprovided by HGNC
    Official Full Name
    TMPRSS11B N-terminal like (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:37262
    See related
    Ensembl:ENSG00000250026 AllianceGenome:HGNC:37262
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward esophagus (RPKM 6.7) See more
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    Genomic context

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    Location:
    4q13.2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (68184129..68218080, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (71627302..71658360, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (69049847..69083798, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene transmembrane serine protease 11F Neighboring gene uncharacterized LOC550113 Neighboring gene solute carrier family 47 member 2 pseudogene Neighboring gene synaptotagmin 14 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr4:68979095-68979596 Neighboring gene ferritin light chain pseudogene 10 Neighboring gene transmembrane serine protease 11B Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:69137738-69138313 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:69138314-69138888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:69143050-69143592 Neighboring gene UDP glucuronosyltransferase family 2 member B11 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • TMPRSS11B N terminal-like
    • TMPRSS11B N-terminus-like protein
    • transmembrane protease serine 11B-like protein
    • transmembrane protease, serine 11B pseudogene

    Clone Names

    • FLJ41562

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104048.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC098799
      Related
      ENST00000514295.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      68184129..68218080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      71627302..71658360 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_025118.1: Suppressed sequence

      Description
      NG_025118.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    2. NM_001129907.2: Suppressed sequence

      Description
      NM_001129907.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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