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    SNU13 small nuclear ribonucleoprotein 13 [ Sus scrofa (pig) ]

    Gene ID: 100155420, updated on 11-Apr-2024

    Summary

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    Gene symbol
    SNU13
    Gene description
    small nuclear ribonucleoprotein 13
    See related
    Ensembl:ENSSSCG00000000058
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    NHP2L1
    Expression
    Ubiquitous expression in ovary (RPKM 16.9), heart (RPKM 12.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (6891014..6900026)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (4262171..4271206)

    Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 134 Neighboring gene meiotic double-stranded break formation protein 1 Neighboring gene chromosome 5 C22orf46 homolog Neighboring gene X-ray repair cross complementing 6 Neighboring gene desumoylating isopeptidase 1 Neighboring gene uncharacterized LOC110260626

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maturation of SSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of box C/D methylation guide snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NHP2-like protein 1
    Names
    NHP2 non-histone chromosome protein 2-like 1
    SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001190226.1 → NP_001177155.1  NHP2-like protein 1

      See identical proteins and their annotated locations for NP_001177155.1

      Status: VALIDATED

      Source sequence(s)
      CU633382
      UniProtKB/TrEMBL
      A0A4X1W4V1, A0A8D0IT75, A0A8D1H1I2, I3L7T5
      Related
      ENSSSCP00000037149.1, ENSSSCT00000038079.1
      Conserved Domains (1) summary
      cd21104
      Location:7 → 128
      SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13

    2. NM_001190227.1 → NP_001177156.1  NHP2-like protein 1

      See identical proteins and their annotated locations for NP_001177156.1

      Status: VALIDATED

      Source sequence(s)
      CU633382
      UniProtKB/TrEMBL
      A0A4X1W4V1, A0A8D0IT75, A0A8D1H1I2, I3L7T5
      Related
      ENSSSCP00000020092.1, ENSSSCT00000023171.4
      Conserved Domains (1) summary
      cd21104
      Location:7 → 128
      SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

      Range
      6891014..6900026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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