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    tymp thymidine phosphorylase [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145512, updated on 25-Apr-2024

    Summary

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    Official Symbol
    tympprovided by Xenbase
    Official Full Name
    thymidine phosphorylaseprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-995988
    See related
    Ensembl:ENSXETG00000015724
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See tymp in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (89457017..89474305, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (79833779..79856918, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene non-SMC condensin II complex subunit H2 Neighboring gene protein tyrosine phosphatase domain-containing protein 1-like Neighboring gene ciliary microtubule associated protein 1A Neighboring gene NME/NM23 nucleoside diphosphate kinase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables 1,4-alpha-oligoglucan phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pyrimidine-nucleoside phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables thymidine phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pyrimidine nucleobase metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pyrimidine nucleoside metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    thymidine phosphorylase
    NP_001120427.1
    XP_031753506.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126955.1 → NP_001120427.1  thymidine phosphorylase

      See identical proteins and their annotated locations for NP_001120427.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161182
      UniProtKB/TrEMBL
      B1H2Y9, F6UIF5
      Related
      ENSXETP00000062631.1, ENSXETT00000063784.3
      Conserved Domains (1) summary
      TIGR02644
      Location:19 → 427
      Y_phosphoryl; pyrimidine-nucleoside phosphorylase

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      89457017..89474305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031897646.1 → XP_031753506.1  thymidine phosphorylase isoform X1

      UniProtKB/TrEMBL
      A0A8J1JA24, F6UIF5
      Conserved Domains (1) summary
      cl40719
      Location:1 → 369
      PRK06078; pyrimidine-nucleoside phosphorylase; Reviewed
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.