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    GPATCH1 G-patch domain containing 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 476495, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GPATCH1provided by VGNC
    Official Full Name
    G-patch domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:41364
    See related
    Ensembl:ENSCAFG00845000257
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See GPATCH1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (119608222..119651412, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (118409808..118452887, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (119854102..119897209, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (119174089..119216907, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (118794999..118838077, complement)

    Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene WD repeat domain 88 Neighboring gene rhophilin Rho GTPase binding protein 2 Neighboring gene FA core complex associated protein 24 Neighboring gene centrosomal protein 89

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G patch domain-containing protein 1; LOW QUALITY PROTEIN: G patch domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051805.1 Reference ROS_Cfam_1.0

      Range
      119608222..119651412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038657587.1 → XP_038513515.1  G patch domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8C0LYY6
      Related
      ENSCAFP00845000268.1, ENSCAFT00845000394.1
      Conserved Domains (2) summary
      pfam01585
      Location:154 → 181
      G-patch; G-patch domain
      pfam07713
      Location:31 → 116
      DUF1604; Protein of unknown function (DUF1604)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049261.1 Alternate UMICH_Zoey_3.1

      Range
      119174089..119216907 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038468669.1 → XP_038324597.1  LOW QUALITY PROTEIN: G patch domain-containing protein 1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

      Range
      118794999..118838077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038593719.1 → XP_038449647.1  G patch domain-containing protein 1

      Conserved Domains (2) summary
      pfam01585
      Location:154 → 181
      G-patch; G-patch domain
      pfam07713
      Location:31 → 116
      DUF1604; Protein of unknown function (DUF1604)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

      Range
      119854102..119897209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038529459.1 → XP_038385387.1  G patch domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8C0LYY6
      Conserved Domains (2) summary
      pfam01585
      Location:154 → 181
      G-patch; G-patch domain
      pfam07713
      Location:31 → 116
      DUF1604; Protein of unknown function (DUF1604)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      118409808..118452887 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_848771.5 → XP_853864.3  G patch domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8C0LYY6, A0A8C0PZF5
      Conserved Domains (2) summary
      pfam01585
      Location:154 → 181
      G-patch; G-patch domain
      pfam07713
      Location:31 → 116
      DUF1604; Protein of unknown function (DUF1604)
    Nucleotide Protein
    Heading Accession and Version

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