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    ITPR1-DT ITPR1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100996539, updated on 12-Dec-2023

    Summary

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    Official Symbol
    ITPR1-DTprovided by HGNC
    Official Full Name
    ITPR1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:44470
    See related
    Ensembl:ENSG00000231249 AllianceGenome:HGNC:44470
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ITPR1-AS1
    Expression
    Broad expression in thyroid (RPKM 1.5), prostate (RPKM 1.2) and 22 other tissues See more
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    Genomic context

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    Location:
    3p26.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (4490317..4493163, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (4484323..4487169, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (4532001..4534847, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene sulfatase modifying factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19347 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:4473683-4474469 Neighboring gene mitochondrial ribosomal protein S10 pseudogene 2 Neighboring gene uncharacterized LOC124909340 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19348 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14018 Neighboring gene Sharpr-MPRA regulatory region 12228 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19349 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19351 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19352 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:4555812-4556324 Neighboring gene Sharpr-MPRA regulatory region 14798 Neighboring gene uncharacterized LOC124906344 Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene uncharacterized LOC105376933

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ITPR1-AS1 promotes small cell lung cancer metastasis by facilitating P21[HRAS] splicing and stabilizing DDX3X to activate the cRaf-MEK-ERK cascade.
      Title: ITPR1-AS1 promotes small cell lung cancer metastasis by facilitating P21(HRAS) splicing and stabilizing DDX3X to activate the cRaf-MEK-ERK cascade.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • ITPR1 antisense RNA 1 (head to head)

    Clone Names

    • AC024168.2, DKFZp686D1113

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_108075.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024168
      Related
      ENST00000412804.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      4490317..4493163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      4484323..4487169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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