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    Col4a4 collagen type IV alpha 4 chain [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100732595, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Col4a4
    Gene description
    collagen type IV alpha 4 chain
    See related
    Ensembl:ENSCPOG00000000720
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    48
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947509.1 (37727892..37851683)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176406.1 (33108284..33228703)

    NW_026947509.1Genomic Context describing neighboring genes Neighboring gene transmembrane 4 L six family member 20 Neighboring gene mitochondrial fission factor Neighboring gene collagen type IV alpha 3 chain Neighboring gene putative ribosomal protein uL10-like Neighboring gene rhomboid domain containing 1 Neighboring gene insulin receptor substrate 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent conferring tensile strength IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen-activated tyrosine kinase receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glomerular basement membrane development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of collagen type IV trimer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-4(IV) chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947509.1 Reference mCavPor4.1

      Range
      37727892..37851683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013157409.3 → XP_013012863.1  collagen alpha-4(IV) chain

      See identical proteins and their annotated locations for XP_013012863.1

      UniProtKB/TrEMBL
      H0UUJ9
      Related
      ENSCPOP00000000641.3
      Conserved Domains (2) summary
      pfam01391
      Location:1122 → 1176
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01413
      Location:1462 → 1566
      C4; C-terminal tandem repeated domain in type 4 procollagen
    Nucleotide Protein
    Heading Accession and Version

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