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    Prpf40b pre-mRNA processing factor 40 homolog B [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100724228, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Prpf40b
    Gene description
    pre-mRNA processing factor 40 homolog B
    See related
    Ensembl:ENSCPOG00000001883
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947491.1 (41143114..41162828)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176410.1 (49998919..50018604, complement)

    NW_026947491.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily H member 3 Neighboring gene microspherule protein 1 Neighboring gene family with sequence similarity 186 member B Neighboring gene formin like 3 Neighboring gene V-type proton ATPase subunit G 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-processing factor 40 homolog B
    Names
    PRP40 pre-mRNA processing factor 40 homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947491.1 Reference mCavPor4.1

      Range
      41143114..41162828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023567670.2 → XP_023423438.1  pre-mRNA-processing factor 40 homolog B isoform X10

      UniProtKB/TrEMBL
      H0UX95
      Related
      ENSCPOP00000001703.3
      Conserved Domains (2) summary
      smart00441
      Location:647 → 693
      FF; Contains two conserved F residues
      cl00157
      Location:84 → 566
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...

    2. XM_023567669.2 → XP_023423437.1  pre-mRNA-processing factor 40 homolog B isoform X5

      UniProtKB/TrEMBL
      A0A286X9V9
      Related
      ENSCPOP00000022218.1
      Conserved Domains (2) summary
      smart00441
      Location:674 → 720
      FF; Contains two conserved F residues
      cl00157
      Location:111 → 593
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...

    3. XM_023567666.2 → XP_023423434.1  pre-mRNA-processing factor 40 homolog B isoform X1

      UniProtKB/TrEMBL
      A0A286X9V9
      Conserved Domains (2) summary
      smart00441
      Location:704 → 750
      FF; Contains two conserved F residues
      cl00157
      Location:141 → 623
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...

    4. XM_063254708.1 → XP_063110778.1  pre-mRNA-processing factor 40 homolog B isoform X6

    5. XM_063254709.1 → XP_063110779.1  pre-mRNA-processing factor 40 homolog B isoform X7

    6. XM_023567667.2 → XP_023423435.1  pre-mRNA-processing factor 40 homolog B isoform X2

      UniProtKB/TrEMBL
      A0A286X9V9
      Conserved Domains (2) summary
      smart00441
      Location:704 → 750
      FF; Contains two conserved F residues
      cl00157
      Location:141 → 623
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...

    7. XM_063254710.1 → XP_063110780.1  pre-mRNA-processing factor 40 homolog B isoform X8

    8. XM_013159188.3 → XP_013014642.1  pre-mRNA-processing factor 40 homolog B isoform X3

      UniProtKB/TrEMBL
      A0A286X9V9
      Conserved Domains (6) summary
      smart00441
      Location:685 → 731
      FF; Contains two conserved F residues
      COG5104
      Location:141 → 631
      PRP40; Splicing factor [RNA processing and modification]
      cd00201
      Location:189 → 218
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
      pfam00397
      Location:150 → 175
      WW; WW domain
      pfam01846
      Location:328 → 377
      FF; FF domain
      cl21455
      Location:450 → 508
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    9. XM_005006482.4 → XP_005006539.1  pre-mRNA-processing factor 40 homolog B isoform X4

      UniProtKB/TrEMBL
      A0A286X9V9
      Related
      ENSCPOP00000031781.1
      Conserved Domains (6) summary
      smart00441
      Location:685 → 731
      FF; Contains two conserved F residues
      COG5104
      Location:141 → 631
      PRP40; Splicing factor [RNA processing and modification]
      cd00201
      Location:189 → 218
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
      pfam00397
      Location:150 → 175
      WW; WW domain
      pfam01846
      Location:328 → 377
      FF; FF domain
      cl21455
      Location:450 → 508
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    10. XM_063254711.1 → XP_063110781.1  pre-mRNA-processing factor 40 homolog B isoform X9

    RNA

    1. XR_010049269.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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