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    LOC100130121 solute carrier family 19 member 3 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100130121, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC100130121
    Gene description
    solute carrier family 19 member 3 pseudogene
    See related
    Ensembl:ENSG00000237210
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    7p11.2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (55244247..55245681)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (55404816..55406250)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (55311940..55313374)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55087710-55088384 Neighboring gene epidermal growth factor receptor Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55134605-55135181 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:55141370-55142569 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55198912-55199819 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:55200333-55201532 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26011 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55214270-55214808 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55219798-55220606 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:55223847-55225046 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55248893-55249512 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55249513-55250132 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55253294-55254067 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55259777-55260662 Neighboring gene EGFR antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55281927-55282427 Neighboring gene OCT4 hESC enhancer GRCh37_chr7:55304767-55305286 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:55307850-55309049 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18186 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18187 Neighboring gene EGFR long non-coding downstream RNA Neighboring gene calmodulin 1 pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:55366838-55367536 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:55378490-55378674 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:55379236-55379736 Neighboring gene RNA exonuclease 1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_022556.1 

      Range
      101..1535
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      55244247..55245681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      55404816..55406250
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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