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    LOC4346125 sulfite oxidase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346125, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346125
    Gene description
    sulfite oxidase
    Locus tag
    OSNPB_080530400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsMCP; OJ1770_H02.34; OJ1789_C07.13
    Expression
    Ubiquitous expression in flower buds (RPKM 66.7), flowers (RPKM 64.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26564480..26569415)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26417766..26422268)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL22 Neighboring gene small nucleolar RNA snoR74 Neighboring gene exocyst complex component EXO70B1 Neighboring gene uncharacterized LOC4346126 Neighboring gene uncharacterized LOC4346127 Neighboring gene nucleotide pyrophosphatase/phosphodiesterase Neighboring gene uncharacterized LOC136351441

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and characterization of plant genes encoding novel peroxisomal molybdoenzymes of the sulphite oxidase family. Nakamura T, et al. J Exp Bot, 2002 Aug. PMID 12147736
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables molybdenum ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables molybdopterin cofactor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sulfite oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sulfur compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sulfite oxidase
    Names
    Moco containing protein
    Moco containing protein(OsMCP)
    Os08g0530400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26564480..26569415
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795307.3 → XP_015650793.1  sulfite oxidase isoform X1

      UniProtKB/TrEMBL
      Q6ZI98, Q6ZJ71, Q8LP96
      Conserved Domains (1) summary
      PLN00177
      Location:1 → 397
      PLN00177; sulfite oxidase; Provisional

    2. XM_066303561.1 → XP_066159658.1  sulfite oxidase isoform X2

    Nucleotide Protein
    Heading Accession and Version

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