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    CLTA clathrin light chain A [ Canis lupus familiaris (dog) ]

    Gene ID: 100856559, updated on 8-Mar-2024

    Summary

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    Official Symbol
    CLTAprovided by VGNC
    Official Full Name
    clathrin light chain Aprovided by VGNC
    Primary source
    VGNC:VGNC:39365
    See related
    Ensembl:ENSCAFG00845011188
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (53742643..53787381)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (51227019..51271906)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (52969170..53014020)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (52245564..52290214)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (52267619..52312459)

    Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene reversion inducing cysteine rich protein with kazal motifs Neighboring gene GLI pathogenesis related 2 Neighboring gene calicin Neighboring gene U6 snRNA-associated Sm-like protein LSm3 Neighboring gene glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase Neighboring gene uncharacterized LOC111098090 Neighboring gene ring finger protein 38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin heavy chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin coat assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin coat of coated pit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin coat of trans-Golgi network vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic endocytic zone cytoplasmic component IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clathrin light chain A
    Names
    clathrin, light chain (Lca)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051815.1 Reference ROS_Cfam_1.0

      Range
      53742643..53787381
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038682138.1 → XP_038538066.1  clathrin light chain A isoform X5

      Conserved Domains (1) summary
      pfam01086
      Location:47 → 204
      Clathrin_lg_ch; Clathrin light chain

    2. XM_038682134.1 → XP_038538062.1  clathrin light chain A isoform X1

      UniProtKB/TrEMBL
      A0A8C0SJD8, A0A8I3NHV2
      Related
      ENSCAFP00845015597.1, ENSCAFT00845019912.1
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 243
      Clathrin_lg_ch; Clathrin light chain

    3. XM_038682135.1 → XP_038538063.1  clathrin light chain A isoform X2

      UniProtKB/TrEMBL
      A0A8C0YXZ3, A0A8I3NTW3
      Related
      ENSCAFP00845015572.1, ENSCAFT00845019881.1
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 231
      Clathrin_lg_ch; Clathrin light chain

    4. XM_038682136.1 → XP_038538064.1  clathrin light chain A isoform X3

      UniProtKB/TrEMBL
      A0A8C0MIF0, A0A8I3NEF5
      Related
      ENSCAFP00845015639.1, ENSCAFT00845019964.1
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 225
      Clathrin_lg_ch; Clathrin light chain

    5. XM_038682137.1 → XP_038538065.1  clathrin light chain A isoform X4

      UniProtKB/TrEMBL
      A0A8C0KUV2, A0A8I3NIM2, A0A8P0N5D3
      Related
      ENSCAFP00845015540.1, ENSCAFT00845019846.1
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 213
      Clathrin_lg_ch; Clathrin light chain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049271.1 Alternate UMICH_Zoey_3.1

      Range
      52245564..52290214
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038490683.1 → XP_038346611.1  clathrin light chain A isoform X5

      Conserved Domains (1) summary
      pfam01086
      Location:47 → 204
      Clathrin_lg_ch; Clathrin light chain

    2. XM_038490679.1 → XP_038346607.1  clathrin light chain A isoform X1

      Conserved Domains (1) summary
      pfam01086
      Location:20 → 243
      Clathrin_lg_ch; Clathrin light chain

    3. XM_038490680.1 → XP_038346608.1  clathrin light chain A isoform X2

      Conserved Domains (1) summary
      pfam01086
      Location:20 → 231
      Clathrin_lg_ch; Clathrin light chain

    4. XM_038490681.1 → XP_038346609.1  clathrin light chain A isoform X3

      Conserved Domains (1) summary
      pfam01086
      Location:20 → 225
      Clathrin_lg_ch; Clathrin light chain

    5. XM_038490682.1 → XP_038346610.1  clathrin light chain A isoform X4

      Conserved Domains (1) summary
      pfam01086
      Location:20 → 213
      Clathrin_lg_ch; Clathrin light chain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

      Range
      52267619..52312459
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038616672.1 → XP_038472600.1  clathrin light chain A isoform X5

    2. XM_038616668.1 → XP_038472596.1  clathrin light chain A isoform X1

      Conserved Domains (1) summary
      pfam01086
      Location:20 → 243
      Clathrin_lg_ch; Clathrin light chain

    3. XM_038616669.1 → XP_038472597.1  clathrin light chain A isoform X2

      Conserved Domains (1) summary
      pfam01086
      Location:20 → 231
      Clathrin_lg_ch; Clathrin light chain

    4. XM_038616670.1 → XP_038472598.1  clathrin light chain A isoform X3

      Conserved Domains (1) summary
      pfam01086
      Location:20 → 225
      Clathrin_lg_ch; Clathrin light chain

    5. XM_038616671.1 → XP_038472599.1  clathrin light chain A isoform X4

      Conserved Domains (1) summary
      pfam01086
      Location:20 → 213
      Clathrin_lg_ch; Clathrin light chain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

      Range
      52969170..53014020
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038552811.1 → XP_038408739.1  clathrin light chain A isoform X5

      Conserved Domains (1) summary
      pfam01086
      Location:47 → 204
      Clathrin_lg_ch; Clathrin light chain

    2. XM_038552807.1 → XP_038408735.1  clathrin light chain A isoform X1

      UniProtKB/TrEMBL
      A0A8C0SJD8, A0A8I3NHV2
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 243
      Clathrin_lg_ch; Clathrin light chain

    3. XM_038552808.1 → XP_038408736.1  clathrin light chain A isoform X2

      UniProtKB/TrEMBL
      A0A8C0YXZ3, A0A8I3NTW3
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 231
      Clathrin_lg_ch; Clathrin light chain

    4. XM_038552809.1 → XP_038408737.1  clathrin light chain A isoform X3

      UniProtKB/TrEMBL
      A0A8C0MIF0, A0A8I3NEF5
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 225
      Clathrin_lg_ch; Clathrin light chain

    5. XM_038552810.1 → XP_038408738.1  clathrin light chain A isoform X4

      UniProtKB/TrEMBL
      A0A8C0KUV2, A0A8I3NIM2, A0A8P0N5D3
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 213
      Clathrin_lg_ch; Clathrin light chain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      51227019..51271906
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022425599.2 → XP_022281307.1  clathrin light chain A isoform X5

      Conserved Domains (1) summary
      pfam01086
      Location:47 → 204
      Clathrin_lg_ch; Clathrin light chain

    2. XM_003639394.4 → XP_003639442.1  clathrin light chain A isoform X1

      UniProtKB/TrEMBL
      A0A8C0SJD8, A0A8I3NHV2
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 243
      Clathrin_lg_ch; Clathrin light chain

    3. XM_003639393.4 → XP_003639441.1  clathrin light chain A isoform X2

      UniProtKB/TrEMBL
      A0A8C0YXZ3, A0A8I3NTW3
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 231
      Clathrin_lg_ch; Clathrin light chain

    4. XM_003639395.4 → XP_003639443.1  clathrin light chain A isoform X3

      UniProtKB/TrEMBL
      A0A8C0MIF0, A0A8I3NEF5
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 225
      Clathrin_lg_ch; Clathrin light chain

    5. XM_003639392.4 → XP_003639440.1  clathrin light chain A isoform X4

      UniProtKB/TrEMBL
      A0A8C0KUV2, A0A8I3NIM2, A0A8P0N5D3
      Conserved Domains (1) summary
      pfam01086
      Location:20 → 213
      Clathrin_lg_ch; Clathrin light chain
    Nucleotide Protein
    Heading Accession and Version

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