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    UBQ1 ubiquitin extension protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824425, updated on 7-Sep-2023

    Summary

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    Gene symbol
    UBQ1
    Gene description
    ubiquitin extension protein 1
    Primary source
    Araport:AT3G52590
    Locus tag
    AT3G52590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EARLY-RESPONSIVE TO DEHYDRATION 16; EMB2167; EMBRYO DEFECTIVE 2167; ERD16; F3C22.8; HAP4; HAPLESS 4; ubiquitin extension protein 1
    Summary
    Ubiquitin extension protein
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (19505379..19506932)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Ribosomal protein S11 family protein Neighboring gene ncRNA Neighboring gene cell wall invertase 2 Neighboring gene ncRNA Neighboring gene GATA zinc finger protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis. Veiseth SV, et al. PLoS Genet, 2011 Mar. PMID 21423664, Free PMC Article
    2. Ubiquitin extension proteins of Arabidopsis thaliana. Structure, localization, and expression of their promoters in transgenic tobacco. Callis J, et al. J Biol Chem, 1990 Jul 25. PMID 2165066
    3. The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1. Dong CH, et al. Proc Natl Acad Sci U S A, 2006 May 23. PMID 16702557, Free PMC Article
    4. The arabidopsis histone methyltransferase SUVR4 binds ubiquitin via a domain with a four-helix bundle structure. Rahman MA, et al. Biochemistry, 2014 Apr 8. PMID 24625295, Free PMC Article
    5. Ubiquitin-specific protease16 modulates salt tolerance in Arabidopsis by regulating Na(+)/H(+) antiport activity and serine hydroxymethyltransferase stability. Zhou H, et al. Plant Cell, 2012 Dec. PMID 23232097, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_115119.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    acts_upstream_of_or_within protein ubiquitination TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    ubiquitin extension protein 1
    NP_566969.1
    • ubiquitin extension protein 1 (UBQ1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to water deprivation, protein ubiquitination, embryo development ending in seed dormancy; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L40e (InterPro:IPR001975), Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin supergroup;Ribosomal protein L40e (TAIR:AT2G36170.1); Has 12437 Blast hits to 7147 proteins in 724 species: Archae - 0; Bacteria - 19; Metazoa - 5493; Fungi - 1424; Plants - 3085; Viruses - 174; Other Eukaryotes - 2242 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19505379..19506932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115119.4 → NP_566969.1  ubiquitin extension protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566969.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHA6, P19232, Q42202
      UniProtKB/TrEMBL
      A0A178W3S3, A0A5S9X4D5
      Conserved Domains (2) summary
      cd01803
      Location:1 → 76
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
      pfam01020
      Location:79 → 126
      Ribosomal_L40e; Ribosomal L40e family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9DHA6.1
    Q42202.2

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