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    LOC7481604 extensin [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7481604, updated on 7-Apr-2023

    Summary

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    Gene symbol
    LOC7481604
    Gene description
    extensin
    Locus tag
    POPTR_010G173500v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (17439313..17441864)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 10 NC_037294.1 (17425114..17427650)

    Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene zinc transporter 1 Neighboring gene pentatricopeptide repeat-containing protein At1g79490, mitochondrial Neighboring gene inosine-5'-monophosphate dehydrogenase 2 Neighboring gene uncharacterized LOC7481605 Neighboring gene ALA-interacting subunit 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    extensin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      17439313..17441864
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002315040.4 → XP_002315076.3  extensin

      UniProtKB/TrEMBL
      A0A2K1YVP5
      Conserved Domains (2) summary
      smart00768
      Location:271 → 355
      X8; Possibly involved in carbohydrate binding
      cl26464
      Location:91 → 282
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

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