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    LOC109726017 MADS-box transcription factor 58-like [ Ananas comosus (pineapple) ]

    Gene ID: 109726017, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC109726017
    Gene description
    MADS-box transcription factor 58-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ananas comosus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Bromeliaceae; Bromelioideae; Ananas
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    Genomic context

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    See LOC109726017 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    1
    Annotation release Status Assembly LG Location
    100 current ASM154086v1 (GCF_001540865.1) 20 NC_033640.1 (408582..409133, complement)

    Linkage Group 20 - NC_033640.1Genomic Context describing neighboring genes Neighboring gene nuclear transport factor 2-like Neighboring gene transcription factor CAULIFLOWER-like Neighboring gene gamma carbonic anhydrase-like 2, mitochondrial Neighboring gene uncharacterized LOC109725808

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_033640.1 Chromosome 20 Reference ASM154086v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MADS-box transcription factor 58-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ananas comosus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM154086v1 Primary Assembly

    Genomic

    1. NC_033640.1 Reference ASM154086v1 Primary Assembly

      Range
      408582..409133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020255449.1 → XP_020111038.1  MADS-box transcription factor 58-like

      UniProtKB/TrEMBL
      A0A6P5GZF8
      Conserved Domains (1) summary
      cl00109
      Location:81 → 134
      MADS; MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type ...
    Nucleotide Protein
    Heading Accession and Version

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