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    LOC114269586 protein ROOT PRIMORDIUM DEFECTIVE 1 [ Camellia sinensis ]

    Gene ID: 114269586, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114269586
    Gene description
    protein ROOT PRIMORDIUM DEFECTIVE 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camellia sinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021026013.1 (760101..768131, complement)

    NW_021026013.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 Neighboring gene UDP-glycosyltransferase 708C1-like Neighboring gene aladin-like Neighboring gene uncharacterized LOC114269561

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021026013 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ROOT PRIMORDIUM DEFECTIVE 1
    Names
    ubiquitin carboxyl-terminal hydrolase family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AHAU_CSS_1 Primary Assembly

    Genomic

    1. NW_021026013.1 Reference AHAU_CSS_1 Primary Assembly

      Range
      760101..768131 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028210916.1 → XP_028066717.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    2. XM_028210915.1 → XP_028066716.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    3. XM_028210926.1 → XP_028066727.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    4. XM_028210923.1 → XP_028066724.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    5. XM_028210914.1 → XP_028066715.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    6. XM_028210917.1 → XP_028066718.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    7. XM_028210931.1 → XP_028066732.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    8. XM_028210934.1 → XP_028066735.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    9. XM_028210920.1 → XP_028066721.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    10. XM_028210928.1 → XP_028066729.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    11. XM_028210919.1 → XP_028066720.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    12. XM_028210918.1 → XP_028066719.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    13. XM_028210924.1 → XP_028066725.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    14. XM_028210922.1 → XP_028066723.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    15. XM_028210927.1 → XP_028066728.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    16. XM_028210929.1 → XP_028066730.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    17. XM_028210933.1 → XP_028066734.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    18. XM_028210932.1 → XP_028066733.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    19. XM_028210930.1 → XP_028066731.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    20. XM_028210921.1 → XP_028066722.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain

    21. XM_028210935.1 → XP_028066736.1  protein ROOT PRIMORDIUM DEFECTIVE 1

      UniProtKB/TrEMBL
      A0A4S4EH28
      Conserved Domains (1) summary
      pfam11955
      Location:56 → 387
      PORR; Plant organelle RNA recognition domain
    Nucleotide Protein
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