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    SDR16C5 short chain dehydrogenase/reductase family 16C member 5 [ Sus scrofa (pig) ]

    Gene ID: 100157319, updated on 11-Apr-2024

    Summary

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    Official Symbol
    SDR16C5provided by VGNC
    Official Full Name
    short chain dehydrogenase/reductase family 16C member 5provided by VGNC
    Primary source
    VGNC:VGNC:98853
    See related
    Ensembl:ENSSSCG00000006245
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Restricted expression toward subcutaneous adipose (RPKM 61.9) See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (75586346..75598985)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (82505913..82518540)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene short-chain dehydrogenase/reductase family 16C member 6-like Neighboring gene uncharacterized LOC106510085 Neighboring gene uncharacterized LOC106510084 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 7 Neighboring gene PLAG1 zinc finger Neighboring gene uncharacterized LOC110260293

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of quantitative trait transcripts for growth traits in the large scales of liver and muscle samples. Xiong X, et al. Physiol Genomics, 2015 Jul. PMID 25901067
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SDR16C5 is an important candidate gene for pig growth traits.
      Title: Identification of quantitative trait transcripts for growth traits in the large scales of liver and muscle samples.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables all-trans-retinol dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retinal metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lipid droplet IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    epidermal retinol dehydrogenase 2
    NP_001182297.1
    XP_013852206.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195368.1 → NP_001182297.1  epidermal retinol dehydrogenase 2

      See identical proteins and their annotated locations for NP_001182297.1

      Status: PROVISIONAL

      Source sequence(s)
      GU373688
      UniProtKB/TrEMBL
      A0A4X1ST96, A0A8D1NRI7, A0A8D1WDE4, D3K5L0
      Related
      ENSSSCP00000006658.3, ENSSSCT00000006844.5
      Conserved Domains (2) summary
      cd05339
      Location:42 → 282
      17beta-HSDXI-like_SDR_c; human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs
      pfam00106
      Location:41 → 231
      adh_short; short chain dehydrogenase

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      75586346..75598985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013996752.2 → XP_013852206.1  epidermal retinol dehydrogenase 2 isoform X1

      UniProtKB/TrEMBL
      A0A4X1ST96, A0A8D1NRI7, A0A8D1WDE4, D3K5L0
      Related
      ENSSSCP00000062343.1, ENSSSCT00000088913.1
      Conserved Domains (2) summary
      cd05339
      Location:42 → 282
      17beta-HSDXI-like_SDR_c; human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs
      pfam00106
      Location:41 → 231
      adh_short; short chain dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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