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    SWI3C SWITCH/sucrose nonfermenting 3C [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838774, updated on 15-Feb-2024

    Summary

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    Gene symbol
    SWI3C
    Gene description
    SWITCH/sucrose nonfermenting 3C
    Primary source
    Araport:AT1G21700
    Locus tag
    AT1G21700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSWI3C; CHB4; CHROMATIN REMODELING COMPLEX SUBUNIT B; F8K7.13; F8K7_13; SWITCH/sucrose nonfermenting 3C
    Summary
    a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (7620001..7624166, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ATPase family associated with various cellular activities (AAA) Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene 8-oxoguanine-DNA glycosylase 1 Neighboring gene proteasome beta subunit C1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SWI/SNF ATP-Dependent Chromatin Remodeling Complex in Arabidopsis Responds to Environmental Changes in Temperature-Dependent Manner. Gratkowska-Zmuda DM, et al. Int J Mol Sci, 2020 Jan 23. PMID 31979421, Free PMC Article
    2. The Arabidopsis thaliana SNF2 homolog AtBRM controls shoot development and flowering. Farrona S, et al. Development, 2004 Oct. PMID 15371304
    3. Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes. Archacki R, et al. Planta, 2009 May. PMID 19301030
    4. The putative SWI/SNF complex subunit BRAHMA activates flower homeotic genes in Arabidopsis thaliana. Hurtado L, et al. Plant Mol Biol, 2006 Sep. PMID 16845477
    5. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Sacharowski SP, et al. Plant Cell, 2015 Jul. PMID 26106148, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The SWI/SNF ATP-Dependent Chromatin Remodeling Complex in Arabidopsis Responds to Environmental Changes in Temperature-Dependent Manner.
      Title: The SWI/SNF ATP-Dependent Chromatin Remodeling Complex in Arabidopsis Responds to Environmental Changes in Temperature-Dependent Manner.
    2. SWI3C is capable of in vitro binding to, and shows in vivo bimolecular fluorescence complementation interaction in cell nuclei with, the DELLA proteins RGA-LIKE2 and RGA-LIKE3.
      Title: DELLA-interacting SWI3C core subunit of switch/sucrose nonfermenting chromatin remodeling complex modulates gibberellin responses and hormonal cross talk in Arabidopsis.
    3. Results show that despite the overall similarity of brm and atswi3c phenotypes, a critical requirement for BRM in the differentiation of reproductive organs suggests that its regulatory functions do not entirely overlap those of ATSWI3C.
      Title: Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_102019.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin remodeling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWITCH/sucrose nonfermenting 3C
    NP_173589.1
    • SWITCH/sucrose nonfermenting 3C (SWI3C); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, chromatin remodeling complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G34430.3); Has 4703 Blast hits to 3623 proteins in 273 species: Archae - 0; Bacteria - 43; Metazoa - 1892; Fungi - 779; Plants - 380; Viruses - 2; Other Eukaryotes - 1607 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7620001..7624166 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102019.4 → NP_173589.1  SWITCH/sucrose nonfermenting 3C [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173589.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XI07
      UniProtKB/TrEMBL
      A0A178WAV0
      Conserved Domains (1) summary
      COG5259
      Location:177 → 631
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XI07.1

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