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    LOC100813874 putative tRNA (cytidine(34)-2'-O)-methyltransferase-like [ Glycine max (soybean) ]

    Gene ID: 100813874, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100813874
    Gene description
    putative tRNA (cytidine(34)-2'-O)-methyltransferase-like
    Locus tag
    GLYMA_08G152700v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (11829594..11835480)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (11747376..11753262)

    Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH130 Neighboring gene SURP and G-patch domain-containing protein 1-like protein Neighboring gene DNA damage-repair/toleration protein DRT100-like Neighboring gene microRNA MIR9746h

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in wobble position cytosine ribose methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wobble position uridine ribose methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative tRNA (cytidine(34)-2'-O)-methyltransferase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252968.2 → NP_001239897.1  putative tRNA (cytidine(34)-2'-O)-methyltransferase-like

      See identical proteins and their annotated locations for NP_001239897.1

      Status: VALIDATED

      Source sequence(s)
      ACUP04002819, FG997494
      UniProtKB/TrEMBL
      A0A0R0IMD7, C6TCU8
      Conserved Domains (1) summary
      cd18094
      Location:79 → 233
      SpoU-like_TrmL; SAM-dependent tRNA methylase related to TrmL

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      11829594..11835480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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