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    si:dkey-286j15.3 si:dkey-286j15.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100038796, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkey-286j15.3provided by ZNC
    Official Full Name
    si:dkey-286j15.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-635
    See related
    Ensembl:ENSDARG00000071036 AllianceGenome:ZFIN:ZDB-GENE-060503-635
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (29990448..30000826)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (30041253..30051631)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes 3 Neighboring gene dual specificity phosphatase 5 Neighboring gene si:dkey-286j15.1 Neighboring gene stonustoxin subunit beta-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100038796

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044351.2 → NP_001037816.2  uncharacterized protein LOC100038796

      See identical proteins and their annotated locations for NP_001037816.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AL845330
      UniProtKB/TrEMBL
      B7ZVS5, Q1MTG3
      Related
      ENSDARP00000095548.3, ENSDART00000104778.5
      Conserved Domains (1) summary
      cd16040
      Location:18 → 198
      SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

    2. NM_001089576.2 → NP_001083045.2  uncharacterized protein LOC100038796

      See identical proteins and their annotated locations for NP_001083045.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AL845330
      UniProtKB/TrEMBL
      B7ZVS5, Q1MTG3
      Related
      ENSDARP00000140428.1, ENSDART00000165313.2
      Conserved Domains (1) summary
      cd16040
      Location:18 → 198
      SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      29990448..30000826
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021469286.1 → XP_021324961.1  uncharacterized protein LOC100038796 isoform X1

      UniProtKB/TrEMBL
      B7ZVS5, Q1MTG3
      Related
      ENSDARP00000122907.1, ENSDART00000147728.3
      Conserved Domains (1) summary
      cd16040
      Location:18 → 198
      SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395119.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      86846..93707
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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