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    mypop.L Myb-related transcription factor, partner of profilin L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398691, updated on 11-Apr-2024

    Summary

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    Official Symbol
    mypop.L
    Official Full Name
    Myb-related transcription factor, partner of profilin L homeolog
    Primary source
    Xenbase:XB-GENE-999501
    Locus tag
    XELAEV_18039077mg
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    mypop; p42pop
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    Genomic context

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    Location:
    chromosome: 8L
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (62941485..62948860)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (49755607..49762969)

    Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 3-like 2 L homeolog Neighboring gene neuro-oncological ventral antigen 2 L homeolog Neighboring gene uncharacterized LOC108698522 Neighboring gene radial spoke head 6 homolog A L homeolog Neighboring gene DM1 protein kinase L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    myb-related transcription factor, partner of profilin
    Names
    Myb-related protein p42POP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001122876.1 → NP_001116348.1  myb-related transcription factor, partner of profilin

      See identical proteins and their annotated locations for NP_001116348.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124852
      UniProtKB/Swiss-Prot
      Q08B72, Q7T0Q7
      Conserved Domains (1) summary
      pfam13873
      Location:12 → 86
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      62941485..62948860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018228745.2 → XP_018084234.1  myb-related transcription factor, partner of profilin isoform X1

      UniProtKB/TrEMBL
      A0A1L8F865, A0A974H7L5
      Conserved Domains (2) summary
      PRK14951
      Location:138 → 238
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      pfam13873
      Location:12 → 88
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    2. XM_018228747.2 → XP_018084236.1  myb-related transcription factor, partner of profilin isoform X1

      UniProtKB/TrEMBL
      A0A1L8F865, A0A974H7L5
      Conserved Domains (2) summary
      PRK14951
      Location:138 → 238
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      pfam13873
      Location:12 → 88
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

    3. XM_041571945.1 → XP_041427879.1  myb-related transcription factor, partner of profilin isoform X1

      UniProtKB/TrEMBL
      A0A1L8F865, A0A974H7L5
      Conserved Domains (2) summary
      PRK14951
      Location:138 → 238
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      pfam13873
      Location:12 → 88
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08B72.1 GenPept UniProtKB/Swiss-Prot:Q08B72

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