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    LINC01821 long intergenic non-protein coding RNA 1821 [ Homo sapiens (human) ]

    Gene ID: 101927406, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC01821provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1821provided by HGNC
    Primary source
    HGNC:HGNC:52626
    See related
    Ensembl:ENSG00000225539 AllianceGenome:HGNC:52626
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    Location:
    2q32.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (194344269..194419631)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (194828097..194903692)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (195208993..195284355)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene glutamate-ammonia ligase pseudogene 6 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 47 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16885 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16886 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:195129495-195129994 Neighboring gene uncharacterized LOC105373816 Neighboring gene COBW domain containing 7 pseudogene Neighboring gene small nucleolar RNA SNORD59

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110222.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC038548, DA512861
      Related
      ENST00000656546.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      194344269..194419631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      194828097..194903692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)