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    LOC101928882 uncharacterized LOC101928882 [ Homo sapiens (human) ]

    Gene ID: 101928882, updated on 10-Oct-2023

    Summary

    Gene symbol
    LOC101928882
    Gene description
    uncharacterized LOC101928882
    See related
    Ensembl:ENSG00000285336
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in ovary (RPKM 1.9), testis (RPKM 1.5) and 10 other tissues See more
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    Genomic context

    See LOC101928882 in Genome Data Viewer
    Location:
    3q26.33
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (180707589..180870178, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (183509451..183671953, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (180425377..180587966, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14926 Neighboring gene tetratricopeptide repeat domain 14 Neighboring gene coiled-coil domain 39 molecular ruler complex subunit Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20877 Neighboring gene CCDC39 antisense RNA 1 Neighboring gene VISTA enhancer hs258 Neighboring gene VISTA enhancer hs655 Neighboring gene RNA, 7SL, cytoplasmic 229, pseudogene Neighboring gene RNF13 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:180522519-180523056 Neighboring gene FLYWCH-type zinc finger 1 pseudogene 1 Neighboring gene ACTB pseudogene 16 Neighboring gene uncharacterized LOC105374240 Neighboring gene uncharacterized LOC124909466 Neighboring gene ribosomal protein L32 pseudogene 10 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:180629449-180630104 Neighboring gene Sharpr-MPRA regulatory region 7910 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14927 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20879 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:180641841-180642341 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14928 Neighboring gene FMR1 autosomal homolog 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.
    EBI GWAS Catalog
    Genome-wide association study identifies five new schizophrenia loci.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109986.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108734, BC047103
      Related
      ENST00000485055.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      180707589..180870178 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      183509451..183671953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)