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    AT5G47890 NADH-ubiquinone oxidoreductase B8 subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834840, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT5G47890
    Gene description
    NADH-ubiquinone oxidoreductase B8 subunit
    Primary source
    Araport:AT5G47890
    Locus tag
    AT5G47890
    See related
    TAIR:AT5G47890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCA23.23; MCA23_23
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    Genomic context

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    See AT5G47890 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (19388704..19390937)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Gut esterase (DUF1350) Neighboring gene cobalt ion-binding protein Neighboring gene eukaryotic release factor 1-1 Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) Neighboring gene respiratory burst oxidase homologue D

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Resolving and identifying protein components of plant mitochondrial respiratory complexes using three dimensions of gel electrophoresis. Meyer EH, et al. J Proteome Res, 2008 Feb. PMID 18189341
    2. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124163.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    part_of mitochondrial respiratory chain complex I HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    NADH-ubiquinone oxidoreductase B8 subunit
    NP_199600.1
    • NADH-ubiquinone oxidoreductase B8 subunit, putative; CONTAINS InterPro DOMAIN/s: Ribosomal protein/NADH dehydrogenase domain (InterPro:IPR007741), NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2 (InterPro:IPR016464); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19388704..19390937
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124163.5 → NP_199600.1  NADH-ubiquinone oxidoreductase B8 subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199600.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIJ2
      UniProtKB/TrEMBL
      A0A178UNC1, A0A5S9YC54
      Conserved Domains (1) summary
      smart00916
      Location:23 → 92
      L51_S25_CI-B8; Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FIJ2.1

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