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    tetratricopeptide repeat (TPR)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836441, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tetratricopeptide repeat (TPR)-containing protein
    Primary source
    TAIR:AT5G63200
    Locus tag
    AT5G63200
    See related
    Araport:AT5G63200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT5G63210; MDC12.17; MDC12_17
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (25348903..25353039)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene MA3 domain-containing protein Neighboring gene ncRNA Neighboring gene golgi-to-ER traffic-like protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. bHLH05 is an interaction partner of MYB51 and a novel regulator of glucosinolate biosynthesis in Arabidopsis. Frerigmann H, et al. Plant Physiol, 2014 Sep. PMID 25049362, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001345582.1
    NM_125715.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tetratricopeptide repeat (TPR)-containing protein
    NP_201125.2
    • tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 18351 Blast hits to 10064 proteins in 1197 species: Archae - 736; Bacteria - 8120; Metazoa - 2665; Fungi - 514; Plants - 588; Viruses - 0; Other Eukaryotes - 5728 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25348903..25353039
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125715.5 → NP_201125.2  tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201125.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULM2, Q67YJ9, Q681L8

    2. NM_001345582.1 → NP_001332645.1  tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T396, Q681L8
    Nucleotide Protein
    Heading Accession and Version

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