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    AT5G62130 Per1-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836333, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G62130
    Gene description
    Per1-like family protein
    Primary source
    Araport:AT5G62130
    Locus tag
    AT5G62130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MTG10.16; MTG10_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (24950264..24953362, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene response regulator 23 Neighboring gene ATP-dependent Clp protease ATP-binding subunit Neighboring gene peptidoglycan-binding LysM domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of Arabidopsis Post-Glycosylphosphatidylinositol Attachment to Proteins Phospholipase 3 Like Genes. Bernat-Silvestre C, et al. Front Plant Sci, 2022. PMID 35222477, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203663.1
    NM_001345526.1
    NM_001345527.1
    NM_125606.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Per1-like family protein
    NP_001190592.1
    • Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT1G16560.3).
    NP_568951.1
    • Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT1G16560.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24950264..24953362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203663.1 → NP_001190592.1  Per1-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190592.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9E4, A0A5S9YGH4, F4K556
      Conserved Domains (1) summary
      pfam04080
      Location:73 → 333
      Per1; Per1-like

    2. NM_125606.3 → NP_568951.1  Per1-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568951.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9E4, A0A5S9YGH4, A0A654GD80, Q94EI5
      Conserved Domains (1) summary
      pfam04080
      Location:71 → 331
      Per1; Per1-like family

    3. NM_001345527.1 → NP_001330741.1  Per1-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7C1, A0A1P8BBR2

    4. NM_001345526.1 → NP_001330742.1  Per1-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9E4, A0A5S9YGH4, Q9FIS5
      Conserved Domains (1) summary
      pfam04080
      Location:4 → 264
      Per1; Per1-like family
    Nucleotide Protein
    Heading Accession and Version

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