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    UBC27 ubiquitin-conjugating enzyme 27 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835159, updated on 7-Sep-2023

    Summary

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    Gene symbol
    UBC27
    Gene description
    ubiquitin-conjugating enzyme 27
    Primary source
    Araport:AT5G50870
    Locus tag
    AT5G50870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K3K7.1; K3K7_1; ubiquitin-conjugating enzyme 27
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (20699408..20701226, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene alpha-taxilin-like protein Neighboring gene Transketolase family protein Neighboring gene Protein kinase superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Kraft E, et al. Plant Physiol, 2005 Dec. PMID 16339806, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203579.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-conjugating enzyme 27
    NP_001190508.1
    • ubiquitin-conjugating enzyme 27 (UBC27); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.4).
    NP_199900.1
    • ubiquitin-conjugating enzyme 27 (UBC27); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.4); Has 10156 Blast hits to 10152 proteins in 398 species: Archae - 0; Bacteria - 2; Metazoa - 4517; Fungi - 2174; Plants - 1846; Viruses - 24; Other Eukaryotes - 1593 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20699408..20701226 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124465.6 → NP_199900.1  ubiquitin-conjugating enzyme 27 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199900.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q42045, Q9FI61
      UniProtKB/TrEMBL
      A0A178U7V3, A0A5S9YCX9
      Conserved Domains (2) summary
      cd14312
      Location:155 → 190
      UBA_II_E2_UBC27_like; UBA domain found in plant ubiquitin-conjugating enzyme E2 27 and similar proteins
      pfam00179
      Location:6 → 145
      UQ_con; Ubiquitin-conjugating enzyme

    2. NM_001203579.1 → NP_001190508.1  ubiquitin-conjugating enzyme 27 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190508.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KAG5
      Conserved Domains (3) summary
      COG5078
      Location:5 → 162
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      cd14312
      Location:166 → 201
      UBA_II_E2_UBC27_like; UBA domain found in plant ubiquitin-conjugating enzyme E2 27 and similar proteins
      pfam00179
      Location:6 → 156
      UQ_con; Ubiquitin-conjugating enzyme
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FI61.1

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