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    NPQ6 YCF20-like protein (DUF565) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834320, updated on 7-Sep-2023

    Summary

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    Gene symbol
    NPQ6
    Gene description
    YCF20-like protein (DUF565)
    Primary source
    Araport:AT5G43050
    Locus tag
    AT5G43050
    See related
    TAIR:AT5G43050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MMG4.6; MMG4_6; NONPHOTOCHEMICAL QUENCHING 6
    Summary
    Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq7
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    Genomic context

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    See NPQ6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (17267838..17269172)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Granulin repeat cysteine protease family protein Neighboring gene pseudo Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mutations in Arabidopsis YCF20-like genes affect thermal dissipation of excess absorbed light energy. Jung HS, et al. Planta, 2010 Mar. PMID 20087601, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At5g43050 mutation exhibit a low nonphotochemical quenching of chlorophyll fluorescence phenotype.
      Title: Mutations in Arabidopsis YCF20-like genes affect thermal dissipation of excess absorbed light energy.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_123671.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within nonphotochemical quenching IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    YCF20-like protein (DUF565)
    NP_199119.1
    • NONPHOTOCHEMICAL QUENCHING 6 (NPQ6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17267838..17269172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123671.4 → NP_199119.1  YCF20-like protein (DUF565) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199119.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G7N1, A0A7G2FK23, Q9FMH9
      Conserved Domains (1) summary
      pfam04483
      Location:105 → 158
      DUF565; Protein of unknown function (DUF565)
    Nucleotide Protein
    Heading Accession and Version

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