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    IPT9 isopentenyltransferase 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832126, updated on 15-Feb-2024

    Summary

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    Gene symbol
    IPT9
    Gene description
    isopentenyltransferase 9
    Primary source
    Araport:AT5G20040
    Locus tag
    AT5G20040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9; ATIPT9; F28I16.190; F28I16_190; isopentenyltransferase 9
    Summary
    Encodes tRNA isopentenyltransferase AtIPT9.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (6767701..6771190, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RAS-related GTP-binding nuclear protein 2 Neighboring gene Plant Tudor-like RNA-binding protein Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis. Miyawaki K, et al. Proc Natl Acad Sci U S A, 2006 Oct 31. PMID 17062755, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001203415.1
    NM_122011.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within cytokinin biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    isopentenyltransferase 9
    NP_001190344.1
    • isopentenyltransferase 9 (IPT9); FUNCTIONS IN: tRNA dimethylallyltransferase activity, ATP binding; INVOLVED IN: tRNA processing, cytokinin biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 1 (TAIR:AT1G68460.1).
    NP_568390.2
    • isopentenyltransferase 9 (IPT9); FUNCTIONS IN: tRNA dimethylallyltransferase activity, ATP binding; INVOLVED IN: tRNA processing, cytokinin biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627), Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 1 (TAIR:AT1G68460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851043.1
    • isopentenyltransferase 9 (IPT9); FUNCTIONS IN: tRNA dimethylallyltransferase activity, ATP binding; INVOLVED IN: tRNA processing, cytokinin biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 1 (TAIR:AT1G68460.1); Has 8435 Blast hits to 8424 proteins in 2622 species: Archae - 0; Bacteria - 5395; Metazoa - 110; Fungi - 129; Plants - 270; Viruses - 0; Other Eukaryotes - 2531 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6767701..6771190 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180712.3 → NP_851043.1  isopentenyltransferase 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851043.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LDP3, Q94IC8, Q9C5J6
      UniProtKB/TrEMBL
      A0A178UJ26, A0A5S9Y5R0, A0A654G2Q2
      Conserved Domains (1) summary
      PLN02840
      Location:26 → 457
      PLN02840; tRNA dimethylallyltransferase

    2. NM_001203415.1 → NP_001190344.1  isopentenyltransferase 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190344.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJ26, F4K2Q7
      Conserved Domains (2) summary
      PLN02840
      Location:26 → 463
      PLN02840; tRNA dimethylallyltransferase
      PRK00091
      Location:52 → 397
      miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

    3. NM_122011.4 → NP_568390.2  isopentenyltransferase 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568390.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJ26
      Conserved Domains (2) summary
      PLN02840
      Location:26 → 453
      PLN02840; tRNA dimethylallyltransferase
      PRK00091
      Location:52 → 391
      miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5J6.1

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