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    AT5G08750 RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830776, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G08750
    Gene description
    RING/FYVE/PHD zinc finger superfamily protein
    Primary source
    Araport:AT5G08750
    Locus tag
    AT5G08750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT5G08750 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (2851814..2854566)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene IBR domain-containing protein Neighboring gene NAD(P)H dehydrogenase C1 Neighboring gene uncharacterized protein Neighboring gene topoisomerase I damage affected-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001085078.1
    NM_001085079.2
    NM_001343031.1
    NM_120956.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/FYVE/PHD zinc finger superfamily protein
    NP_001078547.1
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G63780.1); Has 319 Blast hits to 315 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_001078548.1
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G63780.1); Has 309 Blast hits to 307 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_568206.1
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G63780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2851814..2854566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343032.1 → NP_001331927.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
      Conserved Domains (2) summary
      cd00162
      Location:112 → 156
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:123 → 157
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001343033.1 → NP_001331926.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FZY8, F4KCH0, Q93ZD2
      Conserved Domains (2) summary
      cd00162
      Location:119 → 163
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:130 → 164
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. NM_001343034.1 → NP_001331928.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
      Conserved Domains (2) summary
      cd00162
      Location:112 → 156
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:123 → 157
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. NM_001343035.1 → NP_001331929.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FZY8, F4KCH0, Q93ZD2
      Conserved Domains (2) summary
      cd00162
      Location:119 → 163
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:130 → 164
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    5. NM_001343036.1 → NP_001331930.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
      Conserved Domains (2) summary
      cd00162
      Location:112 → 156
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:123 → 157
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    6. NM_001343037.1 → NP_001331931.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
      Conserved Domains (2) summary
      cd00162
      Location:112 → 156
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:123 → 157
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    7. NM_120956.3 → NP_568206.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568206.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
      Conserved Domains (2) summary
      cd00162
      Location:112 → 156
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:123 → 157
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    8. NM_001085079.2 → NP_001078548.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078548.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FZY8, F4KCH0, Q93ZD2
      Conserved Domains (2) summary
      cd00162
      Location:119 → 163
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:130 → 164
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    9. NM_001343031.1 → NP_001331925.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FZY8, F4KCH0, Q93ZD2
      Conserved Domains (2) summary
      cd00162
      Location:119 → 163
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:130 → 164
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    10. NM_001085078.1 → NP_001078547.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078547.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIH7, A0A384KVW2, A0A654FZY8, Q93ZD2, Q9C5A2
      Conserved Domains (2) summary
      cd00162
      Location:112 → 156
      RING_Ubox; RING-CH finger (C4HC3-type) [structural motif]
      cl17238
      Location:123 → 157
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
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